View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19156_low_6 (Length: 315)
Name: NF19156_low_6
Description: NF19156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19156_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 13578650 - 13578537
Alignment:
| Q |
8 |
attattctcgagctcttacattcaccattaagacactgcagtcctctattagcatgcatcggatattttcgattgcaatcatcgtcagtaatacactctt |
107 |
Q |
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| T |
13578650 |
attattctcgagctcttacattcaccattaagacactgcagtcctctattagcatgcatcggatattttcgattgcaatcatcgtcagtaatacactctt |
13578551 |
T |
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| Q |
108 |
tctctgtgatacct |
121 |
Q |
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| T |
13578550 |
tctctgcgatacct |
13578537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 190 - 315
Target Start/End: Complemental strand, 13578466 - 13578341
Alignment:
| Q |
190 |
gagaatgaccttacccgaaccatacactacaagaaataggaatacaaaatgaatcaccaaatgaaaaaacttatgaattccagtcannnnnnncacctaa |
289 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
13578466 |
gagaatgagcttacccgaaccatacacaacaagaaataggaatacaaaatgaatcaccatatgaaaaaacttatgaattccagtcatttttttcacctaa |
13578367 |
T |
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| Q |
290 |
caaaaataaacttcttttgacacttt |
315 |
Q |
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|||| ||||||||||||| ||||||| |
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| T |
13578366 |
caaatataaacttcttttcacacttt |
13578341 |
T |
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