View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19157_high_1 (Length: 336)
Name: NF19157_high_1
Description: NF19157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19157_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 127 - 329
Target Start/End: Complemental strand, 48402862 - 48402660
Alignment:
| Q |
127 |
ccaacaaacattggaaaactgaagtaacaagatgaatcgaacatactgagaaatcgctaacaccttacacaggtagcactcactaaccatcttggtgaac |
226 |
Q |
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| T |
48402862 |
ccaacaaacattggaaaactgaagtaacaagatgaatcgaacatactgagaaatcgctaacaccttacacaggtagcactcactaaccatcttggtgaac |
48402763 |
T |
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| Q |
227 |
tcctaaaacaaacagtaaacacataagggcactcgctttggtctttgttagtaattgacatcaagggcatttgggctttcccttattgttaaccttgtct |
326 |
Q |
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| T |
48402762 |
tcctaaaacaaacagtaaacacataagggcactcgctttggtctttgttagtaattgacatcaagggcatttgggctttcccttattgttaaccttgtct |
48402663 |
T |
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| Q |
327 |
ctg |
329 |
Q |
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||| |
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| T |
48402662 |
ctg |
48402660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 48403004 - 48402896
Alignment:
| Q |
15 |
aataacaaaagaagtactacaatgtgtttgcaatttgtacatattgagatcttaacgacaatgtctcacatttattggtctaaaatggttgtttgcccaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48403004 |
aataacaaaagaagtactacaatgtgtttgcaatttgtacatattgagatcttaacgacaatgtctcacatttattggtctaaaatggttgtttgcccaa |
48402905 |
T |
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| Q |
115 |
ctcaatgta |
123 |
Q |
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||||||||| |
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| T |
48402904 |
ctcaatgta |
48402896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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