View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19157_low_2 (Length: 328)

Name: NF19157_low_2
Description: NF19157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19157_low_2
NF19157_low_2
[»] chr4 (6 HSPs)
chr4 (22-266)||(37211268-37211515)
chr4 (41-201)||(36102853-36103013)
chr4 (119-209)||(14032633-14032723)
chr4 (27-147)||(6831204-6831324)
chr4 (31-109)||(4459617-4459695)
chr4 (31-109)||(4458879-4458957)
[»] chr2 (5 HSPs)
chr2 (31-190)||(5275937-5276096)
chr2 (119-209)||(18581792-18581882)
chr2 (119-209)||(38697929-38698019)
chr2 (31-102)||(18581719-18581790)
chr2 (31-102)||(38698021-38698092)
[»] scaffold0103 (1 HSPs)
scaffold0103 (55-209)||(1178-1328)
[»] chr6 (4 HSPs)
chr6 (55-209)||(2638681-2638831)
chr6 (52-189)||(12242230-12242367)
chr6 (110-233)||(12623781-12623909)
chr6 (33-109)||(31278622-31278698)
[»] chr7 (6 HSPs)
chr7 (119-209)||(15679140-15679230)
chr7 (53-170)||(6532888-6533005)
chr7 (118-209)||(12380400-12380491)
chr7 (31-106)||(24912650-24912724)
chr7 (27-102)||(15679063-15679138)
chr7 (55-104)||(12380490-12380539)
[»] chr3 (7 HSPs)
chr3 (119-209)||(30378041-30378131)
chr3 (119-209)||(1419036-1419126)
chr3 (31-108)||(31516648-31516725)
chr3 (40-189)||(2602366-2602515)
chr3 (31-109)||(15488623-15488701)
chr3 (31-102)||(1418963-1419034)
chr3 (31-102)||(30378133-30378204)
[»] chr1 (6 HSPs)
chr1 (119-209)||(9957752-9957842)
chr1 (119-201)||(32178000-32178082)
chr1 (84-209)||(42050375-42050500)
chr1 (70-142)||(8360485-8360557)
chr1 (31-102)||(9957844-9957915)
chr1 (33-66)||(37314153-37314186)
[»] scaffold0552 (1 HSPs)
scaffold0552 (27-147)||(10706-10826)
[»] chr5 (2 HSPs)
chr5 (133-209)||(41870538-41870614)
chr5 (35-89)||(31534843-31534897)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 37211515 - 37211268
Alignment:
Q  22 atagacccctttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatc 121  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  37211515 atagatccctttcaactaaaatatcatttgatttgttatcaagattctcccaatttcacggatcataagtatcagaatgagaaatttctttttcataatc 37211416  T
Q  122 atcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatgaattttccaagt- 220  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  37211415 atcaccatatttttcaatattggatgcatttgccacatcattaagaacacttgaattataatcaatttctccattttcattttcatgaattttccaagtt 37211316  T
Q  221 --ttttgtatggctcgcttagtaaaaatgtaacaaagcacttgatggg 266  Q
      ||||||||| ||||||||||||||||||||||||||||||||||||    
T  37211315 ttttttgtatgtctcgcttagtaaaaatgtaacaaagcacttgatggg 37211268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 36103013 - 36102853
Alignment:
Q  41 aatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaata 140  Q
    ||||| |||| | ||||||| |||||| || ||||||| || ||||||| ||||| ||||||||||||  |||| |||||||||||||   |||||||||    
T  36103013 aatataatttgagttgttattaagattctctcaatttcttgaatcataaatatcaaaatgagaaattttgttttcataatcatcaccaaaattttcaata 36102914  T
Q  141 ttggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcat 201  Q
    || ||| |||||| |||||||||| ||| |||| |||||| | |||||||  |||||||||    
T  36102913 ttagatacatttggcacatcattaagaatactttaattatgaccaatttcctcattttcat 36102853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 14032633 - 14032723
Alignment:
Q  119 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  14032633 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 14032723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 6831204 - 6831324
Alignment:
Q  27 cccctttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcac 126  Q
    ||||||||||||| |||||| ||| ||||||| |||||||| |||||||| | ||||| |||| ||||| |||||| ||||| || || ||||||||||     
T  6831204 cccctttcaactataatatccttttatttgttttcaagattctcccaattccttggattataaatatcaaaatgaggaattttttgttcataatcatcat 6831303  T
Q  127 catgtttttcaatattggatg 147  Q
     | | ||||||||||| ||||    
T  6831304 taagattttcaatattagatg 6831324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 4459617 - 4459695
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttc 109  Q
    ||||||||||||||||  || || |||| |||||||| ||||||||||||||||||||  ||||| |||||| ||||||    
T  4459617 tttcaactagaatatcccttgatatgttctcaagattctcccaatttcatggatcatatatatcaaaatgagcaatttc 4459695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 4458957 - 4458879
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttc 109  Q
    |||||||||||||||| ||| |  ||||||| ||||| ||||||||||||| ||||||| ||||| | |||| ||||||    
T  4458957 tttcaactagaatatcctttgacgtgttatcgagattctcccaatttcatgaatcataaatatcaaattgagcaatttc 4458879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 5276096 - 5275937
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttt-taataatcatcaccat 129  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||  |||||| ||| ||||| ||||||| |||| |||| | ||||  ||||||||    
T  5276096 tttcaactagaatatcctttaaattgttatcaagattctcccaatttt-tggatcttaaatatcaaaatgagagattttttttgttataacaatcaccat 5275998  T
Q  130 gtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttc 190  Q
    | |||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||    
T  5275997 gattttgaatattagatgcatttggcacatcattaggaacacttgaattatcatcaatttc 5275937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 18581792 - 18581882
Alignment:
Q  119 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  18581792 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 18581882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 38698019 - 38697929
Alignment:
Q  119 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  38698019 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 38697929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 18581719 - 18581790
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 102  Q
    ||||||||||||||||  || |  ||||||||||||| |||||||||  |||||||||| ||||| ||||||    
T  18581719 tttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaatatcaaaatgag 18581790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 38698092 - 38698021
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 102  Q
    ||||||||||||||||  || |  ||||||||||||| |||||||||  |||||||||| ||||| ||||||    
T  38698092 tttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaatatcaaaatgag 38698021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 1328 - 1178
Alignment:
Q  55 tgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatattggatgcatttgc 154  Q
    ||||||||| |||||| ||||||| || ||||||| ||||| |||||| |||||||| || |||||||||||||   |||| |||||| |    |||||     
T  1328 tgttatcaa-attttctcaatttcttgtatcataaatatcaaaatgaggaatttcttgttcataatcatcaccaatatttttaatattagt---atttgg 1233  T
Q  155 cacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||| ||||||    
T  1232 cacatcattaggaacacttgaattatcatcaatttcttcattttcattttcatga 1178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 2638681 - 2638831
Alignment:
Q  55 tgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatattggatgcatttgc 154  Q
    ||||||||| |||||| ||||||| || ||||||| ||||| |||||| |||||||| || |||||||||||||   |||| |||||| |    |||||     
T  2638681 tgttatcaa-attttctcaatttcttgtatcataaatatcaaaatgaggaatttcttgttcataatcatcaccaatatttttaatattagt---atttgg 2638776  T
Q  155 cacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||| ||||||    
T  2638777 cacatcattaggaacacttgaattatcatcaatttcttcattttcattttcatga 2638831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 12242230 - 12242367
Alignment:
Q  52 atttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatattggatgcatt 151  Q
    |||||||||||||||| |||||  ||| | |||||| | ||||| |||||  ||||| |||||   ||||||||||| | |||| ||||||  |||||||    
T  12242230 atttgttatcaagattctcccatattctttgatcatgaatatcaaaatgatgaatttttttttcgcaatcatcaccaagatttttaatattatatgcatt 12242329  T
Q  152 tgccacatcattaggaacacttgaattataatcaattt 189  Q
    || || ||| ||||||||||||||||||| ||||||||    
T  12242330 tgacatatctttaggaacacttgaattatcatcaattt 12242367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 12623909 - 12623781
Alignment:
Q  110 tttttaataatcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcat-- 207  Q
    ||||| ||||||||||||| | |||| |||||| ||||| || |  |||||||||| |||| ||||||||| |||||||||  |||||||||| ||||      
T  12623909 tttttcataatcatcaccaagatttttaatattagatgctttcggaacatcattagaaacatttgaattatcatcaatttcctcattttcattttcatga 12623810  T
Q  208 ---gaattttccaagtttttgtatggctc 233  Q
       |||||||||||||||||||| |||||    
T  12623809 tccgaattttccaagtttttgtacggctc 12623781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 31278698 - 31278622
Alignment:
Q  33 tcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttc 109  Q
    ||||||||| || | ||| |||||||||||||||| ||| |||||| || ||||||| ||| | |||||| ||||||    
T  31278698 tcaactagattaccctttgatttgttatcaagattctccaaatttcttgaatcataaatattaaaatgagcaatttc 31278622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 15679140 - 15679230
Alignment:
Q  119 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  15679140 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 15679230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 6533005 - 6532888
Alignment:
Q  53 tttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatattggatgcattt 152  Q
    ||||||||||||||| | |  ||||| ||||| |||| ||||| |||||| || ||||| || ||||||||||||| | ||||||||||| |||||||||    
T  6533005 tttgttatcaagattctacatatttcttggataataaatatcaaaatgaggaacttcttgttcataatcatcaccaagattttcaatattagatgcattt 6532906  T
Q  153 gccacatcattaggaaca 170  Q
    | ||||| |||| |||||    
T  6532905 gacacattattaagaaca 6532888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 12380491 - 12380400
Alignment:
Q  118 aatcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    |||||||||||   |||||||||||  ||||||||| ||||| ||||| |||| ||||||||| |||||||||  |||||||||| ||||||    
T  12380491 aatcatcaccaaaattttcaatattatatgcatttggcacataattagaaacatttgaattatcatcaatttcctcattttcattttcatga 12380400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 24912724 - 24912650
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaat 106  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| || ||| | |||| ||||| ||||||||||    
T  24912724 tttcaactagaatatcatttgatttgttatcaagattctcccaatgtcttgg-taataaatatcaaaatgagaaat 24912650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 15679063 - 15679138
Alignment:
Q  27 cccctttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 102  Q
    ||||||||||||||||||||  || |  ||||||||||||| | |||||||  |||||||||| ||||| ||||||    
T  15679063 cccctttcaactagaatatcccttgaggtgttatcaagattcttccaatttgttggatcataaatatcaaaatgag 15679138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 12380539 - 12380490
Alignment:
Q  55 tgttatcaagattttcccaatttcatggatcataagtatcagaatgagaa 104  Q
    ||||||||||||| |||||||||  |||||||||| ||||| ||||||||    
T  12380539 tgttatcaagattctcccaatttgttggatcataaatatcaaaatgagaa 12380490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 30378131 - 30378041
Alignment:
Q  119 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  30378131 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 30378041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 1419036 - 1419126
Alignment:
Q  119 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||| ||||| ||||||||| |||||||||  |||||||||| ||||||    
T  1419036 atcatcaccaaaattttcaatattatatgcatttggcacatcattatgaacatttgaattatcatcaatttcctcattttcattttcatga 1419126  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 31516648 - 31516725
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaattt 108  Q
    ||||||||||||||||  || |||||||||||||||| ||| |||||| |||||||||| ||| | |||||| |||||    
T  31516648 tttcaactagaatatctcttgatttgttatcaagattctccgaatttcttggatcataaatattaaaatgagcaattt 31516725  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 189
Target Start/End: Complemental strand, 2602515 - 2602366
Alignment:
Q  40 gaatatcatttaatttgttatcaagattttcccaatt-tcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaa 138  Q
    ||||||||||| |||| ||||||| ||| ||| |||| || ||||| |||| ||| | ||| || ||||| ||||| | |||||||||||  ||||  ||    
T  2602515 gaatatcatttgatttattatcaatattgtcctaattctcttggattataaatattaaaattaggaatttatttttcaaaatcatcaccaaatttta-aa 2602417  T
Q  139 tattggatgcatttgccacatcattaggaacacttgaattataatcaattt 189  Q
    || |  |||||||||  |||||||||| |||||||||||||| ||||||||    
T  2602416 tagtatatgcatttgaaacatcattagaaacacttgaattatcatcaattt 2602366  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 15488623 - 15488701
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttc 109  Q
    ||||||||| ||||||  || || ||||||||||||| ||||||||||  ||||||||| ||||| |||||| ||||||    
T  15488623 tttcaactaaaatatctcttgatgtgttatcaagattctcccaatttctcggatcataaatatcaaaatgaggaatttc 15488701  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 1418963 - 1419034
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 102  Q
    ||||||||||||||||  || |  ||||||||||||| |||||||||  |||||||||| ||||| ||||||    
T  1418963 tttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaatatcaaaatgag 1419034  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 30378204 - 30378133
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 102  Q
    ||||||||||||||||  || |  ||||||||||||| |||||||||  |||||||||| ||||| ||||||    
T  30378204 tttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaatatcaaaatgag 30378133  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 9957842 - 9957752
Alignment:
Q  119 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  9957842 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 9957752  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 32178000 - 32178082
Alignment:
Q  119 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcat 201  Q
    ||||||||||   |||||||||||  ||||||||| ||||| |||||||||| ||||||||| |||||||||  |||||||||    
T  32178000 atcatcaccaaaattttcaatattatatgcatttggcacattattaggaacatttgaattatcatcaatttcctcattttcat 32178082  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 42050375 - 42050500
Alignment:
Q  84 tcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataat 183  Q
    |||||||||||| |||||  |||||||| || |||||||||||||   ||||||||| |  ||||||||| |||||||||| ||| |||||||| || |     
T  42050375 tcataagtatcaaaatgaagaatttcttgttcataatcatcaccaaaattttcaatactatatgcatttggcacatcatta-gaatacttgaatgatcaa 42050473  T
Q  184 caatttctccattt-tcattctcatga 209  Q
    |||||||| ||||| ||||| ||||||    
T  42050474 caatttcttcatttatcattttcatga 42050500  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 8360557 - 8360485
Alignment:
Q  70 cccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatatt 142  Q
    ||||||||| || ||||||| ||||| |||||||||||| |||||  |||||||||||| | |||||| ||||    
T  8360557 cccaatttcttgtatcataaatatcacaatgagaaatttatttttcttaatcatcaccaagattttcactatt 8360485  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 9957915 - 9957844
Alignment:
Q  31 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 102  Q
    ||||||||||||||||  || |  ||||||||||||| |||||||||  |||||||||| ||||| ||||||    
T  9957915 tttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaatatcaaaatgag 9957844  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 37314186 - 37314153
Alignment:
Q  33 tcaactagaatatcatttaatttgttatcaagat 66  Q
    |||||||||||||||||| |||||||||||||||    
T  37314186 tcaactagaatatcatttgatttgttatcaagat 37314153  T

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Target: scaffold0552 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 10706 - 10826
Alignment:
Q  27 cccctttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcac 126  Q
    ||||||||||||| |||||| ||| ||||||| |||||||| |||||||| | ||||| |||| ||||| |||||| ||||| || || ||||||||||     
T  10706 cccctttcaactataatatccttttatttgttttcaagattctcccaattccttggattataaatatcaaaatgaggaattttttgttcataatcatcat 10805  T
Q  127 catgtttttcaatattggatg 147  Q
     | | ||||||||||| ||||    
T  10806 taagattttcaatattagatg 10826  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 41870614 - 41870538
Alignment:
Q  133 tttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 209  Q
    ||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  41870614 tttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 41870538  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 31534843 - 31534897
Alignment:
Q  35 aactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataa 89  Q
    |||||||||||| ||| ||||| ||||||||||| ||||| ||| ||||||||||    
T  31534843 aactagaatatcctttgatttgatatcaagatttgcccaaattcttggatcataa 31534897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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