View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19158_high_3 (Length: 248)
Name: NF19158_high_3
Description: NF19158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19158_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 36246407 - 36246173
Alignment:
| Q |
1 |
acacatgtagataaattgattaaaatttatatactgagagacttaattattattacttgttgccaagtatgctatgcagctgaattatggtttcttcttc |
100 |
Q |
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| T |
36246407 |
acacatgtagataaattgattaaaatttatatactgagagacttaattattattacttgttgccaagtatgctatgcagctgaattatggtttcttcttc |
36246308 |
T |
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| Q |
101 |
ttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaacgtagacgacaactctttccacatctttgtaatcctgcaactcaaaca |
200 |
Q |
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| T |
36246307 |
ttcaaaagagaatcgtcctctctttatatccggtcggagatagtttgtccaacgtagacgacaactctttccacatctttgtaatcctgcaactcaaaca |
36246208 |
T |
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| Q |
201 |
aaaataaccaaacattttagtttaataatgttgat |
235 |
Q |
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| T |
36246207 |
aaaataaccaaacattttagtttaataatgttgat |
36246173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 2892440 - 2892568
Alignment:
| Q |
53 |
ttacttgttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaa |
152 |
Q |
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| T |
2892440 |
ttacttgttgccaagaatgctatgtagctgaataattgtctcttcctcttcaaatgaaaaccgaccacgttttatatctggtcggagatagtttgtccaa |
2892539 |
T |
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| Q |
153 |
cgtagacgacaactctttccacatctttg |
181 |
Q |
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| T |
2892540 |
cggagacgacaacttttgccacatctttg |
2892568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 37881832 - 37881920
Alignment:
| Q |
93 |
tcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaacgtagacgacaactctttccacatctttg |
181 |
Q |
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| T |
37881832 |
tcttcttcttcaaaggagaaccttcctctcttgatatcaggtctcaaatagtttgtccatcgaagacgacaactcttaccacacctttg |
37881920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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