View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19158_low_1 (Length: 350)
Name: NF19158_low_1
Description: NF19158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19158_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 334
Target Start/End: Complemental strand, 44836611 - 44836286
Alignment:
| Q |
9 |
agcagagatgccgttgaaatttgtaagtttatatagatgaaatagaacacaaattggatgctgtagtcattcaaggtgaagaattttaatcctgaaaatg |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44836611 |
agcagaaatgccgttgaaatttgtaagtttatatagatgaaatagaacacaaattggatgctgtagtcattcaaggtgaagaattttaatcctgaaaatg |
44836512 |
T |
|
| Q |
109 |
atgtcggcagcattagacagagtgggagaatgccaagaatagagagtcaaataattatattcttacccaagactgagccgaatatcacaaaacacaacat |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44836511 |
atgtcggcagcattagacagagtgggagaatgccaagaatagagagtcaaataattttattcttacccaagactgagccgaatatcacaaaacacaacat |
44836412 |
T |
|
| Q |
209 |
gtatatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44836411 |
gtatatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgc |
44836312 |
T |
|
| Q |
309 |
ttctcataaaccagtgatgtcaaaac |
334 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
44836311 |
ttctcataaaccagtgatgtcaaaac |
44836286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 330
Target Start/End: Complemental strand, 44862242 - 44861921
Alignment:
| Q |
9 |
agcagagatgccgttgaaatttgtaagtttatatagatgaaatagaacacaaattggatgctgtagtcattcaaggtgaagaattttaatcctgaaaatg |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44862242 |
agcagaaatgccgttgaaatttgtaagtttacatagatgaaataaaacacgaattggatgctgtagtcattcaaggtgaagaattttaatcctgaaaagg |
44862143 |
T |
|
| Q |
109 |
atgtcggcagcattagacagagtgggagaatgccaagaatagagagtcaaataattatattcttacccaagactgagccgaatatcacaaaacacaacat |
208 |
Q |
| |
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| || ||||||||||||||| | || ||||||||||| ||||| | ||||| ||||||||||||| |||||||||||||||||||| |||||||| || |
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| T |
44862142 |
aaatcagcagcattagacagaacgagaaaatgccaagaacagagaatgaaatagttatattcttacctaagactgagccgaatatcacgaaacacaatat |
44862043 |
T |
|
| Q |
209 |
gtatatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgc |
308 |
Q |
| |
|
||| ||| | ||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44862042 |
gtagatcacagataaggcaagaaaatatccatatgaaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatgattcttaatttttgttgc |
44861943 |
T |
|
| Q |
309 |
ttctcataaaccagtgatgtca |
330 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44861942 |
ttctcataaaccagtgatgtca |
44861921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 44880030 - 44879711
Alignment:
| Q |
11 |
cagagatgccgttgaaatttgtaagtttatatagatgaaatagaacacaaattggatgctgtagtcattcaaggtgaagaattttaatcctgaaaatgat |
110 |
Q |
| |
|
|||| ||||| |||||||||||||||||| |||||||||||| || | ||||||||| ||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
44880030 |
cagaaatgccattgaaatttgtaagtttaaatagatgaaataaaataggaattggatggtgtagtcattcgagctgaagaattttaatcctgaaaatgaa |
44879931 |
T |
|
| Q |
111 |
gtcggcagcattagacagagtgggagaatgccaagaatagagagtcaaataattatattcttacccaagactgagccgaatatcacaaaacacaacatgt |
210 |
Q |
| |
|
|| ||||||| |||||| ||| || ||||| ||||| ||||||| |||| ||| ||||||||| ||| ||||||||| ||||||||||||||||| | |
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|
| T |
44879930 |
gtgagcagcatcagacagggtgagaaaatgcaaagaacagagagtgaaatggttaaattcttacctaaggatgagccgaacatcacaaaacacaacatat |
44879831 |
T |
|
| Q |
211 |
atatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgctt |
310 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44879830 |
agatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatgattcttaatttttgttgctt |
44879731 |
T |
|
| Q |
311 |
ctcataaaccagtgatgtca |
330 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44879730 |
ctcataaaccagtgatgtca |
44879711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 330
Target Start/End: Complemental strand, 44897541 - 44897235
Alignment:
| Q |
23 |
tgaaatttgtaagtttatatagatgaaatagaacacaaattggatgctgtagtcattcaaggtgaagaattttaatcctgaaaatgatgtcggcagcatt |
122 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||| |
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|
| T |
44897541 |
tgaaatttgtaagtttatatagataaaataaaacacaaattggatgctatagtcattcaaggtgaagaatttcaatcctgaaaatgaagtcagcagcatt |
44897442 |
T |
|
| Q |
123 |
agacagagtgggagaatgccaagaatagagagtcaaataattatattcttacccaagactgagccgaatatcacaaaacacaacatgtatatcgctgata |
222 |
Q |
| |
|
||||||| || ||||||||||| | ||| || | ||||||||||||| | ||||||||| ||||||||||| ||||||||||| ||| |||||| |
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|
| T |
44897441 |
agacagaacaagaaaatgccaagaacaactagttaa-tggttatattcttacctaggactgagccaaatatcacaaagcacaacatgtagatcactgata |
44897343 |
T |
|
| Q |
223 |
aggcaagaaaataaccatatgtaatcatccaatatggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccag |
322 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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|
| T |
44897342 |
aggcaaggaaataaccatatgtaatcatccaatatggtccatcaccaagaccatgcattttcatcatgattctcaatttttgttgcttctcataaatcag |
44897243 |
T |
|
| Q |
323 |
tgatgtca |
330 |
Q |
| |
|
|||||||| |
|
|
| T |
44897242 |
tgatgtca |
44897235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 44848578 - 44848261
Alignment:
| Q |
11 |
cagagatgccgttgaaatttgtaagtttatatagatgaaatagaacacaaattggatgctgtagtcattcaaggtgaagaattttaatcctgaaaatgat |
110 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44848578 |
cagaaatgccattgaaatttgtaagtttatatagatgaaataaaatatgaattggatgctgtagtcattcaaggtgaagaattttaatcctgaaaatgaa |
44848479 |
T |
|
| Q |
111 |
gtcggcagcattagacagagtgggagaatgccaagaatagagagtcaaataattatattcttacccaagactgagccgaatatcacaaaacacaacatgt |
210 |
Q |
| |
|
||| |||| | ||| ||| ||||| ||||||||||| ||| | |||| ||||||||||||| ||||||||||| || |||||||||| || |||| |
|
|
| T |
44848478 |
gtcagcagtgtcagaaagaatgggaaaatgccaagaacggag--ttaaatggttatattcttaccaaagactgagccaaacgtcacaaaacataaaatgt |
44848381 |
T |
|
| Q |
211 |
atatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgctt |
310 |
Q |
| |
|
| ||| | ||||||||||||||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44848380 |
agatcaccgataaggcaagaaaatagccgtatgaaatcatccaatatggcccgtcaccaagaccatgcattttcatcatgattcttaatttttgttgctt |
44848281 |
T |
|
| Q |
311 |
ctcataaaccagtgatgtca |
330 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44848280 |
ctcataaaccagtgatgtca |
44848261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 328
Target Start/End: Original strand, 12927430 - 12927579
Alignment:
| Q |
179 |
gactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggcccatcaccaagaccatgc |
278 |
Q |
| |
|
||||| ||| ||||| || |||||||||||||| || ||||| |||||||||||||| || | ||| |||||||||||||||||||| ||||||||| |
|
|
| T |
12927430 |
gactgtgccaaatatgacgaaacacaacatgtagataattgatatggcaagaaaataactgtaagaaataatccaatatggcccatcaccgagaccatgc |
12927529 |
T |
|
| Q |
279 |
attttcatcatgattcttaatttttgttgcttctcataaaccagtgatgt |
328 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||| | |||||| |
|
|
| T |
12927530 |
attttcatcatgattctcaaattttgttgcttctcgtaaactaatgatgt |
12927579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 12927260 - 12927343
Alignment:
| Q |
24 |
gaaatttgtaagtttatatagatgaaatagaacacaaattggatgctgtagtcattcaaggtgaagaattttaatcctgaaaat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12927260 |
gaaatttgtaagtttatatagatgaaataaaacacgaattggatgctgtagtcattcattgtgaagaattttaatcctgaaaat |
12927343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 24031787 - 24031716
Alignment:
| Q |
23 |
tgaaatttgtaagtttatatagatgaaatagaacacaaattggatgctgtagtcattcaaggtgaagaattt |
94 |
Q |
| |
|
||||||||||||||||||||| |||||||| || | ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
24031787 |
tgaaatttgtaagtttatataaatgaaataaaagatgaattggatgttgtagtcattcaagatgaagaattt |
24031716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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