View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19159_high_1 (Length: 340)
Name: NF19159_high_1
Description: NF19159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19159_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 38049775 - 38049547
Alignment:
| Q |
1 |
cctcattcgtgtgcgaatgcgagcctttatcccaggaagatcttgaagccattgacgccactcttcaatcttctctccccaaacccagcaccaccaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38049775 |
cctcattcgtgtgcgaatgcgagcctttatcccaggaagatcttgaagccattgacgccactcttcaatcttctctccccaaacccagcaccaccaacaa |
38049676 |
T |
|
| Q |
101 |
caacaataacaaacgccccttcgcctctcactctccccctcgccgcagcagccgccgacgcttacccacatcgctcattgctcttcaactcccaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38049675 |
caacaataacaaacgccccttcgcctctcactctccccctcgccgcagcagccgccgacgcttacccacatcgctcattgctcttcaactcccaccttct |
38049576 |
T |
|
| Q |
201 |
ctctctttctcaccttctccaggtccccc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38049575 |
ctctctttctcaccttctccaggtccccc |
38049547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University