View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19159_high_14 (Length: 350)
Name: NF19159_high_14
Description: NF19159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19159_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 52460269 - 52459930
Alignment:
| Q |
1 |
aaatcagattcgtatcgtccattcattgatctagcatagatatcttcaattgtgattggattatcaacagaaaaattatttgaactccttttagaaatat |
100 |
Q |
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| T |
52460269 |
aaatcagattcgtatcgtccattcattgatctagcatagatatcttcgattgtgattggattatcaacagaaaaattatttgaactccttttagaaatat |
52460170 |
T |
|
| Q |
101 |
cacaagtttgagaaagcctctcaatgacattttttgcaagagtccttggagattcatgcccatacccattgtctgtccaatcttgggatgaggaacgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52460169 |
cacaagtttgagaaagcctctcaatgacattttttgcaagagtccttggagattcatgcccatacccattgtctgtccaatcttgggatgaggaacgaag |
52460070 |
T |
|
| Q |
201 |
acggctaactttagtttctctaaatgaatgagccctaggtttgtctttgactccattagttggcgaattaggtgttgtatgttgaacttttggtggaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52460069 |
acggctaactttagtttctctaaatgaatgagccctaggtttgtctttgactccattagttggcgaattaggtgttgtatgttgaacttttggtggaaga |
52459970 |
T |
|
| Q |
301 |
ttcatgcaaggatttccatgtctactgccattcctctgtg |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
52459969 |
ttcatgcaaggatttccatgtctactgccattcctctgtg |
52459930 |
T |
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