View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19159_high_19 (Length: 321)
Name: NF19159_high_19
Description: NF19159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19159_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 35936856 - 35936734
Alignment:
| Q |
129 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaaaacagtctccaacactgaacattcaaccccactc |
228 |
Q |
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| T |
35936856 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaacacagtctccaacactgaacattcaaccccactc |
35936757 |
T |
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| Q |
229 |
acaaaaatcaagcattccagaat |
251 |
Q |
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||||||||||||||||||||||| |
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| T |
35936756 |
acaaaaatcaagcattccagaat |
35936734 |
T |
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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35936984 - 35936908
Alignment:
| Q |
1 |
aaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacattcgactccactg |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35936984 |
aaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacactcgactccactg |
35936908 |
T |
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