View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19159_high_2 (Length: 519)

Name: NF19159_high_2
Description: NF19159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19159_high_2
NF19159_high_2
[»] chr5 (4 HSPs)
chr5 (4-497)||(40516664-40517157)
chr5 (115-163)||(42910475-42910523)
chr5 (121-180)||(5173786-5173845)
chr5 (120-161)||(8825465-8825506)
[»] chr7 (4 HSPs)
chr7 (310-378)||(39900868-39900936)
chr7 (97-165)||(39887629-39887697)
chr7 (116-161)||(36729584-36729629)
chr7 (115-161)||(47430762-47430808)
[»] chr1 (3 HSPs)
chr1 (121-188)||(43049436-43049503)
chr1 (102-161)||(38577926-38577986)
chr1 (121-163)||(13697233-13697275)
[»] scaffold0020 (1 HSPs)
scaffold0020 (115-152)||(172529-172566)
[»] chr3 (3 HSPs)
chr3 (97-161)||(4030229-4030293)
chr3 (402-446)||(44713-44757)
chr3 (402-446)||(13582390-13582434)
[»] chr8 (2 HSPs)
chr8 (114-161)||(3631174-3631221)
chr8 (115-148)||(28431397-28431430)
[»] chr4 (3 HSPs)
chr4 (103-161)||(30746107-30746165)
chr4 (115-162)||(32028235-32028282)
chr4 (120-153)||(36114915-36114948)
[»] chr2 (3 HSPs)
chr2 (121-161)||(16244926-16244966)
chr2 (114-162)||(36322714-36322762)
chr2 (114-157)||(9436122-9436165)


Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 4 - 497
Target Start/End: Original strand, 40516664 - 40517157
Alignment:
Q  4 catcatcatatgtctcttgagctcaggactttcactcatcaaaattattgtgcaacaagcaagtcactcatcaaaactattgtgcaatatgtgtgtcgga 103  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||| ||    
T  40516664 catcatcatatgtctcttgagctgaggactttcactcatcaaaattattgtgcaacaagcaattcactcatcaaaattattgttcaacatgtgtgtcaga 40516763  T
Q  104 atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacacgcacattgataccaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  40516764 atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctataaaatcatagtaggttgtcgtgattcaaacacacgcacagtgataccaa 40516863  T
Q  204 atatatatttaatgctctgtaagtagatagattttcactactctatttgattgaattaaaacagtaagtttgaggtttataacgaaacatttgagcatag 303  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40516864 atatatacttaatgctctgcaagtagatagattttcactactctatttgattgaattaaaacagtaaatttgaggtttataacgaaacatttgagcatag 40516963  T
Q  304 tactgctcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacataataaacaatatataaactgcacaa 403  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40516964 tactggtcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacataataaacaatatataaactgcacaa 40517063  T
Q  404 ggcaagcgggtaataaactgcgccgccaggcctttttggatggtatagtacttgcattcgggttatccaaatctcaacaattccaactgatgat 497  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40517064 ggcaagcaggtaataaactgcgccgtcaggcctttttggatggcatagtacttgcattcgggttatccaaatctcaacaattccaactaatgat 40517157  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 42910523 - 42910475
Alignment:
Q  115 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcaca 163  Q
    ||||| |||||||||||||||| |||||||||||||||  |||||||||    
T  42910523 ccaccgtgatttttcaaaagctgcactttgtagcttctacaaaatcaca 42910475  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 5173845 - 5173786
Alignment:
Q  121 tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattc 180  Q
    |||||||| |||| ||||| |||||||||||||||||||||| |||| |  |||||||||    
T  5173845 tgatttttaaaaatctacattttgtagcttctgtaaaatcacggtagatcaccgtgattc 5173786  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 8825465 - 8825506
Alignment:
Q  120 atgatttttcaaaagctacactttgtagcttctgtaaaatca 161  Q
    ||||||||| |||||||||| |||||| ||||||||||||||    
T  8825465 atgattttttaaaagctacattttgtaacttctgtaaaatca 8825506  T

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Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 39900936 - 39900868
Alignment:
Q  310 tcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacat 378  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  39900936 tcccatgcatgatactctacattgcattattcacattttcatcacgtaatgatggttaagactccacat 39900868  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 39887629 - 39887697
Alignment:
Q  97 tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagt 165  Q
    |||| |||||| || | |||||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  39887629 tgtcagaatcatggcgacccaccgtgattttccaaaagctacactttgtagcttctgcaaaatcacagt 39887697  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 36729584 - 36729629
Alignment:
Q  116 caccatgatttttcaaaagctacactttgtagcttctgtaaaatca 161  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  36729584 caccatgattttgcaaaagctacactttgtaggttttgtaaaatca 36729629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 47430808 - 47430762
Alignment:
Q  115 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 161  Q
    |||| ||||||||| ||||||||||||| |||||||||| |||||||    
T  47430808 ccacaatgatttttaaaaagctacacttggtagcttctgcaaaatca 47430762  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 43049436 - 43049503
Alignment:
Q  121 tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacac 188  Q
    |||||||| |||||||||||||||||||||||| |||||||  || ||| |||||||||||| |||||    
T  43049436 tgattttttaaaagctacactttgtagcttctgcaaaatcatggtgggtcgccgtgattcaagcacac 43049503  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 38577986 - 38577926
Alignment:
Q  102 gaatcaaggtggcccaccatgatttttcaaaagctacactttgtagc-ttctgtaaaatca 161  Q
    |||||| | ||| ||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  38577986 gaatcacgttggtccaccttgattttccaaaagctacactttgtagctttctgtaaaatca 38577926  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 13697233 - 13697275
Alignment:
Q  121 tgatttttcaaaagctacactttgtagcttctgtaaaatcaca 163  Q
    ||||||||||||||||||||| ||||||||| | |||||||||    
T  13697233 tgatttttcaaaagctacactgtgtagcttcagcaaaatcaca 13697275  T

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Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 172529 - 172566
Alignment:
Q  115 ccaccatgatttttcaaaagctacactttgtagcttct 152  Q
    ||||||||||||||||||||||||||||||||||||||    
T  172529 ccaccatgatttttcaaaagctacactttgtagcttct 172566  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 4030293 - 4030229
Alignment:
Q  97 tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 161  Q
    |||| |||||| ||||| ||||  | ||||||||||||||||||||||||||||||| |||||||    
T  4030293 tgtcagaatcacggtggtccactgtaatttttcaaaagctacactttgtagcttctgcaaaatca 4030229  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 44713 - 44757
Alignment:
Q  402 aaggcaagcgggtaataaactgcgccgccaggcctttttggatgg 446  Q
    |||||||||||| || |||||||||||| || |||||||||||||    
T  44713 aaggcaagcgggcaacaaactgcgccgctagacctttttggatgg 44757  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 13582390 - 13582434
Alignment:
Q  402 aaggcaagcgggtaataaactgcgccgccaggcctttttggatgg 446  Q
    |||||||||||| ||||||| ||| ||| ||||||||||||||||    
T  13582390 aaggcaagcgggcaataaacagcgtcgctaggcctttttggatgg 13582434  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 3631174 - 3631221
Alignment:
Q  114 cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 161  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  3631174 cccatcatgatttttcaaaagatacactttgtaacttctgtaaaatca 3631221  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 28431397 - 28431430
Alignment:
Q  115 ccaccatgatttttcaaaagctacactttgtagc 148  Q
    ||||||||||||||||||||||||||||| ||||    
T  28431397 ccaccatgatttttcaaaagctacactttatagc 28431430  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 30746165 - 30746107
Alignment:
Q  103 aatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 161  Q
    ||||||| || |||||||||||||||||||| | ||||||||||| ||||| |||||||    
T  30746165 aatcaagatgacccaccatgatttttcaaaaacaacactttgtaggttctgcaaaatca 30746107  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 32028235 - 32028282
Alignment:
Q  115 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac 162  Q
    |||| |||||||||||||||||||||||| |||||| || ||||||||    
T  32028235 ccactatgatttttcaaaagctacactttatagcttatgcaaaatcac 32028282  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 36114915 - 36114948
Alignment:
Q  120 atgatttttcaaaagctacactttgtagcttctg 153  Q
    |||||||||||||||||||||||| |||||||||    
T  36114915 atgatttttcaaaagctacactttatagcttctg 36114948  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 16244966 - 16244926
Alignment:
Q  121 tgatttttcaaaagctacactttgtagcttctgtaaaatca 161  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  16244966 tgattttccaaaagctacactctgtagcttctgtaaaatca 16244926  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 36322714 - 36322762
Alignment:
Q  114 cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac 162  Q
    |||||| ||||||||||||| ||||||||||||||||||  ||||||||    
T  36322714 cccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcac 36322762  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 9436165 - 9436122
Alignment:
Q  114 cccaccatgatttttcaaaagctacactttgtagcttctgtaaa 157  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||    
T  9436165 cccactatgatttttcaaaaactacactttgtagtttctgtaaa 9436122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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