View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19159_high_25 (Length: 302)

Name: NF19159_high_25
Description: NF19159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19159_high_25
NF19159_high_25
[»] chr6 (2 HSPs)
chr6 (8-302)||(18639760-18640054)
chr6 (105-271)||(18632092-18632258)
[»] chr3 (4 HSPs)
chr3 (140-302)||(1837450-1837612)
chr3 (8-151)||(41384412-41384555)
chr3 (8-87)||(1837375-1837454)
chr3 (199-299)||(41384285-41384379)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 18640054 - 18639760
Alignment:
Q  8 ggcaacatctggcttgggattatctactgcatgcaagctttctaaggaaggatatgttgttgttattggtaattctttattctttttgctaatcacgcta 107  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640054 ggcaacatcaggcttgggattatctactgcatgtaaactttctaaggaaggatatgttgttgttattggtaattctttattctttttgctaatcacgcta 18639955  T
Q  108 caaatgctataataccttatgttttaactccttttatatgctaacaatccactattttctacaactctatttaattctaagtgaaatccactttctaagt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18639954 caaatgctataataccttatgttttaactccttttatatgctaataatccactattttctacaactctatttaattctaagtgaaatccactttctaagt 18639855  T
Q  208 gcatgcttccattcacaataaaattgatcaaattgcaccaccactgtgattatataaagctctatctctaaactgtagtttttgtccaaatcttg 302  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18639854 gcatgctttcattcacaataaaattgatcaaattgcaccaccactgtgattatataaagctctatctcttaactgtagtttttgtccaaatcttg 18639760  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 105 - 271
Target Start/End: Original strand, 18632092 - 18632258
Alignment:
Q  105 ctacaaatgctataataccttatgttttaactccttttatatgctaacaatccactattttctacaactctatttaattctaagtgaaatccactttcta 204  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||  |||||||||||||||||||||||| |||    
T  18632092 ctacaaatgctaaaataccttatgttttaactccttttatatgctaacaattcattattttctacaactccgtttaattctaagtgaaatccacttccta 18632191  T
Q  205 agtgcatgcttccattcacaataaaattgatcaaattgcaccaccactgtgattatataaagctcta 271  Q
    |||||||||||| ||||||  ||| || ||||||||| | |  ||  |||||||||| |||||||||    
T  18632192 agtgcatgcttctattcaccgtaagatcgatcaaattacgctgccgttgtgattataaaaagctcta 18632258  T

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Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 140 - 302
Target Start/End: Original strand, 1837450 - 1837612
Alignment:
Q  140 tttatatgctaacaatccactattttctacaactctatttaattctaagtgaaatccactttctaagtgcatgcttccattcacaataaaattgatcaaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1837450 tttatatgctaacaatccactattttctacaactctatttaattctaagtgaaatccactttctaagtgcatgcttccattcacaataaaattgatcaaa 1837549  T
Q  240 ttgcaccaccactgtgattatataaagctctatctctaaactgtagtttttgtccaaatcttg 302  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1837550 ttgcaccaccactgtgattatataaagctctatctctgaactgtagtttttgtccaaatcttg 1837612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 41384555 - 41384412
Alignment:
Q  8 ggcaacatctggcttgggattatctactgcatgcaagctttctaaggaaggatatgttgttgttattggtaattctttattctttttgctaatcacgcta 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  41384555 ggcaacttctggcttgggattatctactgcatgcaagctttctaaggaaggatatgttgttgttattggtaattctttattctttttgctaatctcgcaa 41384456  T
Q  108 caaatgctataataccttatgttttaactccttttatatgctaa 151  Q
     |||||||| |||||||||| |||||||||||||||||||||||    
T  41384455 taaatgctaaaataccttatcttttaactccttttatatgctaa 41384412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 1837375 - 1837454
Alignment:
Q  8 ggcaacatctggcttgggattatctactgcatgcaagctttctaaggaaggatatgttgttgttattggtaattctttat 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1837375 ggcaacatctggcttgggattatctactgcatgcaagctttctaaggaaggatatgttgttgttattggtaattctttat 1837454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 41384379 - 41384285
Alignment:
Q  199 tttctaagtgcatgcttccattcacaataaaattgatcaaattgcaccaccactgtgattatataaagctctatctctaaactgtagtttttgtccaaat 298  Q
    |||||||||||||||||| ||||||   ||||||||||||||| | |  ||||||||||||||| |||      ||||||||||||||||||||||||||    
T  41384379 tttctaagtgcatgcttcgattcactgcaaaattgatcaaattacgctgccactgtgattatatgaag------ctctaaactgtagtttttgtccaaat 41384286  T

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