View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19159_high_3 (Length: 472)
Name: NF19159_high_3
Description: NF19159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19159_high_3 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 47048009 - 47047557
Alignment:
| Q |
19 |
ggacatcatcataatttcaaaataagcttcttgtggaaaaacatagtttcctaaaacaggaccaggtaatggtaaagctgttctaataacagaagtaacc |
118 |
Q |
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| T |
47048009 |
ggacaacatcgtaatttcaaaataagcttcttgtggaaaaacatagtttcctaaaacaggaccaggtaatggtaaagctgttctaataacagaagtaacc |
47047910 |
T |
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| Q |
119 |
atagaattattttgaataacttgattagattttcttaatccaggattcaatctaactttctgcataaactcatctgatccacgtgaaacttcccaactaa |
218 |
Q |
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| T |
47047909 |
atagaattattttgaataacttgattagattttcttaatccaggattcaatctaactttctgcataaactcatctgatccacgtgaaacttcccaactaa |
47047810 |
T |
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| Q |
219 |
tctcagcttcagatgattctcttcgataatcacctacaggtgcacatgatcctaacagtgtaaccttctttgatggcgatggcatgtaacttttatagct |
318 |
Q |
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| T |
47047809 |
tctcagcttcagatgattctcttcgataatcacctacaggtgcacatgatcctaacagtgtaaccttctttgatggcgatggcatgtaacttttatagct |
47047710 |
T |
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| Q |
319 |
agtgaaagcaaatcttgaccatccattttcaacagcatc---agtgat-gatgtccatctcattgccgactcctgaacaagtttgttgttctttttccag |
414 |
Q |
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| T |
47047709 |
agtgaaagcaaatcttgaccatccattttcaacagcatcagcagccatagatggattt-tcaatccag----ctgaacaagtttgttgttctttttccag |
47047615 |
T |
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| Q |
415 |
aaacataactgcgaaacagagaattattattgttcttgttactaccttgttctaattg |
472 |
Q |
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| T |
47047614 |
aaacataactgcgaaacagagaattattattgttcttgttactaccttgttctaattg |
47047557 |
T |
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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 16291615 - 16291697
Alignment:
| Q |
387 |
ctgaacaagtttgttgttctttttccagaaacataactgcgaaacagagaattattattgttcttgttactaccttgttctaattg |
472 |
Q |
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| T |
16291615 |
ctgaacaaatttgttgttctttttccaaaaacattactgcagaacagaga---attattgttattgttactacctcgttctaattg |
16291697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 359
Target Start/End: Original strand, 5656251 - 5656296
Alignment:
| Q |
314 |
tagctagtgaaagcaaatcttgaccatccattttcaacagcatcag |
359 |
Q |
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| T |
5656251 |
tagctagtgaaagcaaatcttgaccatccattttctatagcatcag |
5656296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 5655966 - 5656018
Alignment:
| Q |
32 |
atttcaaaataagcttcttgtggaaaaacatagtttcctaaaacaggaccagg |
84 |
Q |
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| T |
5655966 |
atttcaaaataagcttcttgtggaaatgcatggttccccaaaaaaggaccagg |
5656018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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