View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19159_high_4 (Length: 411)
Name: NF19159_high_4
Description: NF19159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19159_high_4 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Complemental strand, 27858576 - 27858176
Alignment:
| Q |
11 |
gcagaacctgtgtgtgaatataatagcacatctattcaatgctcctattggttcagaggaaactgcagtaggtgttggaactgtaggagtatcagaggca |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27858576 |
gcagaaccggtgtgtgaatataatagcacatctattcaatgctcctattggttcagaggaaactgcagtaggtgttggaactgtagggtcatcagaggca |
27858477 |
T |
|
| Q |
111 |
ataatgttagctggtttagcttttaaaaggaaatggcagactaagagaaaagcagaaggcaaaccttatgataagccgaacatagttaccggagctaatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
27858476 |
ataatgttagctggtttagcttttaaaaggaaatggcagactaagagaaaagcagaaggcaaaccttatgataagcctaacatagttactggagctaatg |
27858377 |
T |
|
| Q |
211 |
tgcaggttgatcatgaattatgtttataatgttatgaagtttgaaataactactaatatgtgtttaatgcatgctcacataatgagaaataggtagaagt |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27858376 |
tgcaggttgatcttgaattatgtttataatgttatgaagtttgaaataactactaatatgtgtttaatgcatgctcacataatgagaaataggtagaagt |
27858277 |
T |
|
| Q |
311 |
gtatgtttggataagtggtgggtttgatataaccacgacagtatcgtgattttgataaagctctaaaatgtagcttttgtcaaaatcgtagcggatcatc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
27858276 |
gtatgtttggataagtggtgggtttgatataaccacgacagtatcgtgattttgataaagctctaaaatgtagcttttgtcaaaatcgtggtggatcatc |
27858177 |
T |
|
| Q |
411 |
g |
411 |
Q |
| |
|
| |
|
|
| T |
27858176 |
g |
27858176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 217
Target Start/End: Original strand, 29179279 - 29179423
Alignment:
| Q |
73 |
ctgcagtaggtgttggaactgtaggagtatcagaggcaataatgttagctggtttagcttttaaaaggaaatggcagactaagagaaaagcagaaggcaa |
172 |
Q |
| |
|
||||||| |||||||| ||||| || ||||||||| |||||||||||||| || || || |||||||| ||||||| || |||||| ||| || || |
|
|
| T |
29179279 |
ctgcagttggtgttggcactgttggctcatcagaggctataatgttagctggattggcattcaaaaggaagtggcagaacaaaagaaaacaagagggaaa |
29179378 |
T |
|
| Q |
173 |
accttatgataagccgaacatagttaccggagctaatgtgcaggt |
217 |
Q |
| |
|
|||||||| || || ||||| || || ||||| ||||| ||||| |
|
|
| T |
29179379 |
gccttatgacaaacctaacattgtcactggagccaatgtccaggt |
29179423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 11271770 - 11271810
Alignment:
| Q |
356 |
gtgattttgataaagctctaaaatgtagcttttgtcaaaat |
396 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
11271770 |
gtgattttgataaagctccaaagtgtagtttttgtcaaaat |
11271810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University