View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1915_low_1 (Length: 562)
Name: NF1915_low_1
Description: NF1915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1915_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 86 - 543
Target Start/End: Complemental strand, 7422786 - 7422329
Alignment:
| Q |
86 |
cctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcc |
185 |
Q |
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| T |
7422786 |
cctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcc |
7422687 |
T |
|
| Q |
186 |
tctaataccatattcctgagccagagacttgtgagcatcagcatcaagtgctgccacagtaactacaccctttaatacagtagctgccttctcccatata |
285 |
Q |
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| T |
7422686 |
tctaataccatattcatgagccagagacttgtgagcatcagcatcaagtgctgccacagtaactacaccctttaatacagtagctgccttctcccatata |
7422587 |
T |
|
| Q |
286 |
ggagtcagaacctcacagtgtccacaccgtggagcaaagaattcaacaagaacaacttcatttgaattcagaaccttggagttgaagttgtcaggagtga |
385 |
Q |
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| T |
7422586 |
ggagtcagaacctcacagtgtccacaccgtggagcaaagaattcaacaagaacaacttcatttgaattcagaaccttggagttgaagttgtcaggagtga |
7422487 |
T |
|
| Q |
386 |
gttgaagaacggttgaggaagaaccgtagatagcttgagagaggatgagattgttaaagagtaagatagttagagcaatgcatgagagtttcgccattgt |
485 |
Q |
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| T |
7422486 |
gttgaagaacggttgaggaagaaccgtagatagcttgagagaggatgagattgttaaagagtaagatagttagagcaatgcatgagagtttcgccattgt |
7422387 |
T |
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| Q |
486 |
tgaagaagggtatattgatggatggatggataattgcagagatgaggatagtatatat |
543 |
Q |
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| T |
7422386 |
tgaagaagggtatattgatggatggatggataattgcagagatgaggatagtatatat |
7422329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 7512262 - 7512166
Alignment:
| Q |
88 |
tgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgccttta-tagttggaaat |
183 |
Q |
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| T |
7512262 |
tgttgaagtgcaaattatgtgattggtttgacatctctggctccttggtaatcaaccggtggtttcccaggggcaaacacctttattagttggaaat |
7512166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 7516546 - 7516450
Alignment:
| Q |
88 |
tgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgccttta-tagttggaaat |
183 |
Q |
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| T |
7516546 |
tgttgaagtgcaaattatgtgattggtttgacatctctggctccttggtaatcaaccggtggtttcccaggggcaaacacctttattagttggaaat |
7516450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 200 - 361
Target Start/End: Original strand, 36639114 - 36639275
Alignment:
| Q |
200 |
cctgagccagagacttgtgagcatcagcatcaagtgctgccacagtaactacaccctttaatacagtagctgccttctcccatataggagtcagaacctc |
299 |
Q |
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||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |
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| T |
36639114 |
cctgagccagagattggtgagcatcagcatcaagtgctgctacagtaactacaccctttaacacagtagctgccttctcccatattggagtcagagcctt |
36639213 |
T |
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| Q |
300 |
acagtgtccacaccgtggagcaaagaattcaacaagaacaacttcatttgaattcagaacct |
361 |
Q |
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| T |
36639214 |
acagtgcccgcaccatggagcaaagaattcaacaagaacaactccatttgaattcagaacct |
36639275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 357 - 505
Target Start/End: Original strand, 36640704 - 36640852
Alignment:
| Q |
357 |
aaccttggagttgaagttgtcaggagtgagttgaagaacggttgaggaagaaccgtagatagcttgagagaggatgagattgttaaagagtaagatagtt |
456 |
Q |
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||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||| ||| ||||| |||||||||||||| ||||| ||||||||| |
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| T |
36640704 |
aaccttggacttgaagttgttaggagtgagttgaagaacaggtgaggaagaaccgtagagagcgtgagaaaggatgagattgttgaagagaaagatagtt |
36640803 |
T |
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| Q |
457 |
agagcaatgcatgagagtttcgccattgttgaagaagggtatattgatg |
505 |
Q |
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| T |
36640804 |
acagcaatgaatgagagttttgccattgttgaagaatcgtagattgatg |
36640852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 36638094 - 36638212
Alignment:
| Q |
86 |
cctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcc |
185 |
Q |
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||||||||| |||||| |||| ||| | ||| | || |||||||||||||||||||| ||||| ||||| || |||||| ||||||||||||||||||| |
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| T |
36638094 |
cctgttgaagtgcaaattctgcgatcggtttaacgtctctggctccttggtaatcaactggtggttttccaggtgaaaacacctttatagttggaaatcc |
36638193 |
T |
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| Q |
186 |
tctaataccatattcctga |
204 |
Q |
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||||||||||||||||||| |
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| T |
36638194 |
tctaataccatattcctga |
36638212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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