View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1915_low_11 (Length: 228)
Name: NF1915_low_11
Description: NF1915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1915_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 42804987 - 42804853
Alignment:
| Q |
24 |
aaatgaaattaaaacctcaatccaaagtaacatagatgaaagcataacttaacttcaatgagaatggatcctctcatgttctttcatgttaaaattatat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
42804987 |
aaatgaaattaaaacctcaatccaaagtaacatagaagaaagcataacttaacttcaatgagaatagatcctctcatgttctttcatgttgaaattatat |
42804888 |
T |
|
| Q |
124 |
gcgacagttagtgaaaaacggcaataaacttatat |
158 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
42804887 |
gcgacagttagtgaaaaatggcaataaacttatat |
42804853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 42762585 - 42762451
Alignment:
| Q |
24 |
aaatgaaattaaaacctcaatccaaagtaacatagatgaaagcataacttaacttcaatgagaatggatcctctcatgttctttcatgttaaaattatat |
123 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42762585 |
aaatgaaattaaaacttcaatccaaagtaacatagaagaaagcataaattcacttcaatgagaatggatcctctcatgctctttcatgttaaaattatat |
42762486 |
T |
|
| Q |
124 |
gcgacagttagtgaaaaacggcaataaacttatat |
158 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42762485 |
gtgacagttagtgaaaaacggcaataaacttatat |
42762451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 42761156 - 42761122
Alignment:
| Q |
175 |
agcatcaccaatctccccgcatttaccatacatat |
209 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42761156 |
agcatcaccaatctcaccgcatttaccatacatat |
42761122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 33048931 - 33048811
Alignment:
| Q |
24 |
aaatgaaattaaaacctcaatccaaagtaacatagatgaaagcataacttaacttcaatgagaatggatcctctcatgttctttcatgttaaaattatat |
123 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33048931 |
aaatgaaattaaaacctcaatcctaagtaacatagaagaaagcataacttaacttcaatgagaatggatcctctca----------tgttaaaattatat |
33048842 |
T |
|
| Q |
124 |
gcgacagttagtgaaaaacggcaataaactt |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33048841 |
gcgacagttagtgaaaaacggcaataaactt |
33048811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University