View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1915_low_2 (Length: 418)

Name: NF1915_low_2
Description: NF1915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1915_low_2
NF1915_low_2
[»] chr4 (1 HSPs)
chr4 (96-395)||(9949271-9949570)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 96 - 395
Target Start/End: Complemental strand, 9949570 - 9949271
Alignment:
Q  96 tgttacctcttctgtctccgcgggttgtagttgtcgaacgaaacttgaatcagtgtggacaaaatcagattctccacacgaaaacttttcatcttctcca 195  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9949570 tgttacctcttctgtctccgcgggttgtagttgtcgaacgacacttgaatcagtgtggacaaaatcagattctccacacgaaaacttttcatcttctcca 9949471  T
Q  196 cttgatagtttaactgaatcagagtccccagaccctgaattcaggaccgaccgtgttctggtaccaactgaaccatcgttcgatgaaatggtttcattaa 295  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  9949470 cttgatagcttaactgaatcagagtccccggaccctgaattcaggaccgaccgtgttctgataccaactgaaccatcgttcgatgaaatggtttcgttaa 9949371  T
Q  296 ccacttcatcttgtgcttgtaacaaaatctcaaacaataacaacaatatagatattgttattgatgttgataaaaattctctagctagaaaagatgataa 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9949370 ccacttcatcttgtgcttgtaacaaaatctcaaacaataacaacaatatagatattgttattgatgttgataaaaattctctagctagaaaagatgataa 9949271  T

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