View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1915_low_3 (Length: 413)
Name: NF1915_low_3
Description: NF1915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1915_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 240 - 398
Target Start/End: Original strand, 543994 - 544160
Alignment:
| Q |
240 |
ttgacagtagtaacttgttattattataattattattagtttttc--------tttctttccatcaaaatgcttgttcttttctttagtatgttctgttt |
331 |
Q |
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| T |
543994 |
ttgacagtagtaacttgttattattataattattattagtttttctttctttctttctttccatcaaaatgcttgttcttttctttagtatgttctgtct |
544093 |
T |
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| Q |
332 |
agttaaatgtatgcagtagnnnnnnnattaaataataaatacagtggtatattgaaagcatcaaact |
398 |
Q |
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| T |
544094 |
agttaaatgtatgtagtagtttttttattaaataataaatacagtggtatattgaaagcatcaaact |
544160 |
T |
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Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 41060408 - 41060513
Alignment:
| Q |
4 |
tgttcatcatgcttatttttataagcctttttcttgtaaacgttacagattttttaaagttattacattcacagtaaatattacagatttttaagtttta |
103 |
Q |
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| T |
41060408 |
tgttcaccatgcttattt--ataaacctttttcttgtaaacgttacaaattttttaaacttattacattcacagtaaatattacagattttt-agtttta |
41060504 |
T |
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| Q |
104 |
cgtttttgt |
112 |
Q |
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||||||||| |
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| T |
41060505 |
cgtttttgt |
41060513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 41060591 - 41060637
Alignment:
| Q |
129 |
atcacactgttttgttgttgtttgtataccatacattactttgtaac |
175 |
Q |
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| T |
41060591 |
atcacactgttttgttattgttagtataccaaacattactttgtaac |
41060637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 12103068 - 12102958
Alignment:
| Q |
4 |
tgttcatcatgcttatttttataagcctttttcttgtaaacgttacagattttttaaagttattacattcacagtaaatattacagatttttaagtttta |
103 |
Q |
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| T |
12103068 |
tgttcatcatgcttattc--ataagtctttttcttgtacacgttacagattttt-aaactta--acattcacagtaaatattacagatttttaagtttta |
12102974 |
T |
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| Q |
104 |
cgtttttgtaagtcaa |
119 |
Q |
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| T |
12102973 |
cgattttgtaagtcaa |
12102958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 34290463 - 34290424
Alignment:
| Q |
240 |
ttgacagtagtaacttgttattattataattattattagt |
279 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
34290463 |
ttgatagtagtaacttgttattattataattattattagt |
34290424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 34291022 - 34290987
Alignment:
| Q |
84 |
ttacagatttttaagttttacgtttttgtaagtcaa |
119 |
Q |
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|
| T |
34291022 |
ttacagatttttaagttttatgtttttgtaagtcaa |
34290987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 34291047 - 34291011
Alignment:
| Q |
21 |
tttataagcctttttcttgtaaacgttacagattttt |
57 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |
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| T |
34291047 |
tttacaagcttttttcttgtaaacgttacagattttt |
34291011 |
T |
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