View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19160_low_2 (Length: 757)
Name: NF19160_low_2
Description: NF19160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19160_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 900564 - 900344
Alignment:
| Q |
12 |
cacagacacaaaaacacattggacacaacaatgacattaacaccaatatctatttgnnnnnnnnnttacataatagaatgtaatcacatatgtcggtgtc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
900564 |
cacagacacaaaaacacattggacacaacaatgacattaacaccaatatctatttgaaaaaaaaatgacataatagaatgtaatcacatatgtcggtgtc |
900465 |
T |
|
| Q |
112 |
agacatggcaccaaacacgtctctgattagaagtattggctctaaagtaacaaaagttaattcaattctaacaacccaaatgaaataaggagaatgttaa |
211 |
Q |
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| T |
900464 |
agacatggcaccaaacacgtctttgattagaagtattggctctaaagtaacaaaagctaattcaattctaacaacccaaatgaaataaggagaatgttaa |
900365 |
T |
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| Q |
212 |
ccggtgctcccggggcattgg |
232 |
Q |
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||||||||||| ||||||||| |
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| T |
900364 |
ccggtgctcccagggcattgg |
900344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 620 - 742
Target Start/End: Complemental strand, 899956 - 899834
Alignment:
| Q |
620 |
ggtaatgaatgttacatactgtttgagtaaggcttcgatcttgcgtgttttgtgttcaattcttgtaataatggcttctgcattatcagcttcaacgaat |
719 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
899956 |
ggtaatgaatgttacatactgtttgagtaaggcttcgatcttgcgtgttttgtgttcaattcttgtaataatggcttctgcattatcagcttcaacgaat |
899857 |
T |
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| Q |
720 |
ccttctgatcctgccatacaaat |
742 |
Q |
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| T |
899856 |
ccttctgatcctgccatacaaat |
899834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 452 - 527
Target Start/End: Complemental strand, 900124 - 900049
Alignment:
| Q |
452 |
ccttgcaacgttcatcactagtcatggcataggttccttcaagtgcagttttaagggcttccactggtttatacct |
527 |
Q |
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| T |
900124 |
ccttgcaacgttcatcactagtcatggcataggttccttcaagtgcagttttaagggcttccactggtttatacct |
900049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 900269 - 900206
Alignment:
| Q |
307 |
tttcaagacagaaaattatatttatagtttcctacctgtgcccccgaggttaacaagatgcgtg |
370 |
Q |
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| T |
900269 |
tttcaagacagaaaattatatttatagtttcctacctgtgcccccgaggttaacaagatgcgtg |
900206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 636 - 737
Target Start/End: Original strand, 51191520 - 51191621
Alignment:
| Q |
636 |
tactgtttgagtaaggcttcgatcttgcgtgttttgtgttcaattcttgtaataatggcttctgcattatcagcttcaacgaatccttctgatcctgcca |
735 |
Q |
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|||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51191520 |
tactgtttgagtaaggtttcgatctttcgggttttgtgttcaattctagtaataatggcttctgcattatcagcttcaacgaatccttctgaccctgcca |
51191619 |
T |
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| Q |
736 |
ta |
737 |
Q |
| |
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|| |
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| T |
51191620 |
ta |
51191621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 452 - 523
Target Start/End: Original strand, 51191331 - 51191402
Alignment:
| Q |
452 |
ccttgcaacgttcatcactagtcatggcataggttccttcaagtgcagttttaagggcttccactggtttat |
523 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
51191331 |
ccttgcaacgctcatcactagtcatggcataggttccttcaagggcagttttaagggcttccacgggtttat |
51191402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 7609683 - 7609650
Alignment:
| Q |
199 |
aggagaatgttaaccggtgctcccggggcattgg |
232 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
7609683 |
aggagaatgttaaccagtgctcccggggcattgg |
7609650 |
T |
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