View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19160_low_3 (Length: 754)
Name: NF19160_low_3
Description: NF19160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19160_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 33455559 - 33455090
Alignment:
| Q |
18 |
aaaggaactatgacaattttgtatgcttgatgaatttgagaaagttgaaggaattgatgatggtgttgttgctattcccatcttaacttcttactcatca |
117 |
Q |
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| T |
33455559 |
aaaggaactatgataattttgtatgcttgatgaatttgagaaagttgaaggaattgatgatggtgttgttgctattcccatcttaacttcttactcatca |
33455460 |
T |
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| Q |
118 |
tcatcatcttcaccattatcaatattccttgctttcgaattgaattgaattgatcaataacaaagatcgatctgaaaaattaaacataaaacatcatatc |
217 |
Q |
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| T |
33455459 |
tcatcatcttcaccattatcaatattccttgctttcaaattgaattgaattgatcaataacaaagatcgatctgaaaaattaaacataaaacatcatatc |
33455360 |
T |
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| Q |
218 |
atatgtaaatgatgcaagaaaattaattagaaaacatatgaaaataaaaatacatgaaattttgctttcatcattttcaggtttgtgttatcatatgtca |
317 |
Q |
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| T |
33455359 |
atatgtaaatgatgcaagaaa----attagaaaacatatgaaaataaaaatacatgaaattttgctttcatcattttcaggtttgagttatc--atgtca |
33455266 |
T |
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| Q |
318 |
tgtannnnnnnnnnnnnnnnnnnnngacacacatgtaatattgtacctgatagatgtgaagagtatgaaaggatgaagagttttcaaacatcgttatcac |
417 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33455265 |
tgtaatatatatatatacatatatagacacacatgtaatattgtacctgatagatgtgaagagtatgaaaggatgaagagttttcaaacatcgttttcac |
33455166 |
T |
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| Q |
418 |
ttctgagctattgaagggttcttgaattccttctctctcacacatacaggcacactcacatatgcactctcaatgg |
493 |
Q |
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| T |
33455165 |
ttctgagctattgaagggttcttgaattccttctctctcacacatacaggcacactcacatatgcactctcaatgg |
33455090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 542 - 658
Target Start/End: Complemental strand, 33455041 - 33454925
Alignment:
| Q |
542 |
gcagttagtactattgtctatgcaacacaacttatggaaaaagaaagcatacaattataaaaattaaaaatggtggatttggaggggactcatatatctc |
641 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33455041 |
gcagttagtactattgtctatgcaacacaacttatggaaaaagaaagcatacaattataaaaattaaaaatggtggatttggaggggactcatatatctc |
33454942 |
T |
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| Q |
642 |
tctcaaataaacacagt |
658 |
Q |
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| T |
33454941 |
tctcaaataaacacagt |
33454925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 679 - 743
Target Start/End: Complemental strand, 33454890 - 33454826
Alignment:
| Q |
679 |
aaggaaagagaagcggtcgttgttcttctccctcttctttgatcttcaccacctcctttagtatt |
743 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33454890 |
aaggaaagagaagcggtcgttgttcttctccctcttctttgatcttcaccacctcctttaatatt |
33454826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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