View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19160_low_4 (Length: 537)

Name: NF19160_low_4
Description: NF19160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19160_low_4
NF19160_low_4
[»] chr1 (8 HSPs)
chr1 (193-511)||(1803895-1804219)
chr1 (446-511)||(18006127-18006192)
chr1 (107-172)||(1804237-1804302)
chr1 (112-172)||(9411952-9412012)
chr1 (112-172)||(13832677-13832737)
chr1 (112-172)||(37350648-37350708)
chr1 (112-172)||(40535446-40535506)
chr1 (112-172)||(42434675-42434735)
[»] chr6 (3 HSPs)
chr6 (112-511)||(34526717-34527121)
chr6 (7-108)||(8814500-8814601)
chr6 (112-172)||(14206580-14206640)
[»] chr7 (11 HSPs)
chr7 (435-516)||(35406877-35406958)
chr7 (193-284)||(45436853-45436944)
chr7 (193-293)||(35407000-35407100)
chr7 (112-431)||(47262543-47262866)
chr7 (118-172)||(35407117-35407171)
chr7 (477-511)||(47262460-47262494)
chr7 (112-172)||(6587730-6587790)
chr7 (112-172)||(16189126-16189186)
chr7 (112-172)||(19893630-19893690)
chr7 (112-172)||(38150391-38150451)
chr7 (112-172)||(46940020-46940080)
[»] chr3 (10 HSPs)
chr3 (193-434)||(17331719-17331966)
chr3 (112-172)||(17332082-17332142)
chr3 (112-172)||(38572923-38572983)
chr3 (477-512)||(17331632-17331667)
chr3 (193-235)||(17332022-17332064)
chr3 (112-172)||(8034522-8034582)
chr3 (112-172)||(10695946-10696006)
chr3 (112-172)||(14242907-14242967)
chr3 (112-172)||(24596243-24596303)
chr3 (112-172)||(43171578-43171638)
[»] chr5 (13 HSPs)
chr5 (193-292)||(41284363-41284462)
chr5 (107-427)||(15927347-15927669)
chr5 (112-172)||(9717282-9717342)
chr5 (193-431)||(9717360-9717614)
chr5 (392-460)||(41281784-41281851)
chr5 (112-172)||(3514451-3514511)
chr5 (112-172)||(41284479-41284539)
chr5 (477-512)||(15927722-15927757)
chr5 (477-511)||(9717663-9717697)
chr5 (112-172)||(3466329-3466389)
chr5 (112-172)||(19858255-19858315)
chr5 (112-172)||(22527581-22527641)
chr5 (112-172)||(25764343-25764403)
[»] chr8 (6 HSPs)
chr8 (112-172)||(14123351-14123411)
chr8 (107-172)||(10582094-10582159)
chr8 (119-172)||(37233494-37233547)
chr8 (112-172)||(26426916-26426976)
chr8 (112-172)||(33817646-33817706)
chr8 (112-172)||(34501229-34501289)
[»] chr4 (2 HSPs)
chr4 (112-172)||(1121459-1121519)
chr4 (112-172)||(26619166-26619226)
[»] chr2 (5 HSPs)
chr2 (108-172)||(16492417-16492481)
chr2 (480-520)||(38987379-38987419)
chr2 (112-172)||(15381948-15382008)
chr2 (112-172)||(34599710-34599770)
chr2 (112-172)||(45463690-45463750)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 193 - 511
Target Start/End: Complemental strand, 1804219 - 1803895
Alignment:
Q  193 gtaaggtcctatagtaagtgttatatagaggtgaaagcaagaacttgtcaaactgttaagaatacttcagtggtagagcgttacgtacaagattgcatgg 292  Q
    |||||||||||| |||||| |||||||||||||||||| | || ||| ||||||||||| |||||||||||||| |||||||| || ||||| |||||||    
T  1804219 gtaaggtcctattgtaagtattatatagaggtgaaagcgaaaatttgacaaactgttaacaatacttcagtggttgagcgttatgtgcaagactgcatgg 1804120  T
Q  293 ttagaggttcaactcctg-----tgttttgtttatatttttt--cctttacgttgcttcttgttcgtggggcccaatatattttacttgtgatcacnnnn 385  Q
      |  |||||||||||||     ||||||  |||||||||||  |||||||  | |||||| ||||||||||||||||||||||| || | ||||         
T  1804119 ccaagggttcaactcctgcttggtgtttttcttatattttttttcctttacagttcttctttttcgtggggcccaatatattttaattttaatca-tttt 1804021  T
Q  386 nnngctcaaactaattccttttgtttaattaaaaaagaaaaccctttatttaatctatgaattatctgtcacaactagaattagaagttagaaactcaga 485  Q
       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1804020 tttgctcaaactaattccttttgtttaattaaaaatgaaaaccctttatttaatctatgaattatctgtcacaactagaattagaagttagaaactcata 1803921  T
Q  486 aaccaccacacccacccatatcctca 511  Q
    ||||||||||||||||||||||||||    
T  1803920 aaccaccacacccacccatatcctca 1803895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 18006192 - 18006127
Alignment:
Q  446 attatctgtcacaactagaattagaagttagaaactcagaaaccaccacacccacccatatcctca 511  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  18006192 attatctgtcacaactagaatttgaagttagaaactcataaaccaccacacccactcatatcctca 18006127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 1804302 - 1804237
Alignment:
Q  107 accaaggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| |||| ||||||||||| | |||  | |||||||||||| ||||||||||||||||||||||    
T  1804302 accagggccggcccatagcccgttgggactaggcgacgacactgggcctcaaatttttgggggccc 1804237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 9411952 - 9412012
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  9411952 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 9412012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 13832677 - 13832737
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  13832677 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 13832737  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 37350708 - 37350648
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  37350708 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 37350648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 40535446 - 40535506
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  40535446 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggggccc 40535506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 42434735 - 42434675
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  42434735 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 42434675  T

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Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 112 - 511
Target Start/End: Complemental strand, 34527121 - 34526717
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggcccnnnnnnnnnnnnnnnnnnnngtaaggtcctatagtaagt 211  Q
    |||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||                    |||||||||||||||||||    
T  34527121 ggccggcccatagcccgtcggggctgggcgacgacactgggcctcaaatttttgggggccc---atgtattttttttatatgtaaggtcctatagtaagt 34527025  T
Q  212 gttatatagaggtgaaagcaagaacttgtcaaactgttaagaatacttcagtggtagagcgttacgtacaagattgcatggttagaggttcaactcct-- 309  Q
     |||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| ||||||||  | |||||  ||||||  |  ||||||||||||      
T  34527024 attatatagaggtgaaagcgagaatttgacaaactgttaacaatacttcagtggttgagcgttatttgcaagaccgcatggccaagggttcaactcctgc 34526925  T
Q  310 ------gtgttttgtttatat--tttttcctttacgttgcttcttgttcgtggggcccaatatattttacttgtgatcacnnnnnnngctcaaactaatt 401  Q
          | |||||  ||| ||  ||||||||||||  | |||||| ||||||||||||||||||||||| || | ||||         ||||||||||||    
T  34526924 ttggcggcgtttttcttacattatttttcctttacagttcttctttttcgtggggcccaatatattttaattttaatca--tttttttctcaaactaatt 34526827  T
Q  402 ccttttgtttaattaaaaaagaaaaccctttatttaatctatgaattatctgtcacaactagaattagaagttagaaactcagaaaccaccacacccacc 501  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  34526826 ccttttgtttaattaaaaatgaaaaccctttatttaatctataaattttctggcacaactagaattagaagttagaaagtcataaaccaccacacccacc 34526727  T
Q  502 catatcctca 511  Q
    ||||||||||    
T  34526726 catatcctca 34526717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 8814500 - 8814601
Alignment:
Q  7 gcagcacagacccatcacagtaccacatcctaaatagaaaattgaaataaagaacaacaaaatagaacaccactagaagctaagaagatacaacaccaac 106  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  8814500 gcagcaaagacccagcacagtaccacatcctaaacagaaaattgaattaaagaacaacaaaccagaacaccactagaagctaagaagatacaacaccaac 8814599  T
Q  107 ac 108  Q
    ||    
T  8814600 ac 8814601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 14206580 - 14206640
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  14206580 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 14206640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 435 - 516
Target Start/End: Complemental strand, 35406958 - 35406877
Alignment:
Q  435 ttaatctatgaattatctgtcacaactagaattagaagttagaaactcagaaaccaccacacccacccatatcctcagacct 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35406958 ttaatctatgaattatctgtcacaactagaattagaagttagaaactcagaaaccaccacacccacccatatcctcagacct 35406877  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 45436853 - 45436944
Alignment:
Q  193 gtaaggtcctatagtaagtgttatatagaggtgaaagcaagaacttgtcaaactgttaagaatacttcagtggtagagcgttacgtacaaga 284  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| |||| ||||||||||||||| |||||||||||||||||||||||    
T  45436853 gtaaggtcctatagtaagtgttatatagaggtgaaagagagaacttgacaaattgttaagaatacttcggtggtagagcgttacgtacaaga 45436944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 193 - 293
Target Start/End: Complemental strand, 35407100 - 35407000
Alignment:
Q  193 gtaaggtcctatagtaagtgttatatagaggtgaaagcaagaacttgtcaaactgttaagaatacttcagtggtagagcgttacgtacaagattgcatgg 292  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||  | | |||||||||||||||||||||||||||||||||| |||| |||||||    
T  35407100 gtaaggtcctatagtaagtgttatatagaggtgaaaacgagaacttgatagattgttaagaatacttcagtggtagagcgttacgtataagactgcatgg 35407001  T
Q  293 t 293  Q
    |    
T  35407000 t 35407000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 112 - 431
Target Start/End: Complemental strand, 47262866 - 47262543
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggcccnnnnnnnnnnnnnnnnnnnngtaaggtcctatagtaagt 211  Q
    |||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||                    |||||||||||| ||||||    
T  47262866 ggccggcccatagcccgtcggggctgggcgacgacactgggcctcaaatttttgggggccc---atatattttttttatatgtaaggtcctattgtaagt 47262770  T
Q  212 gttatatagaggtgaaagcaagaacttgtcaaactgttaagaatacttcagtggtagagcgttacgtacaagattgcatggttagaggttcaactcct-- 309  Q
     |||||||||| ||||||| |||| ||| ||| ||||||| | |||||||||||| |||||||| || |||||  || |||  |  ||||||||||||      
T  47262769 attatatagagctgaaagcgagaatttgacaagctgttaacactacttcagtggttgagcgttatgtgcaagaccgcttggccaagggttcaactcctgc 47262670  T
Q  310 ---gtgttttgttt--atattttttcctttacgttgcttcttgttcgtggggcccaatatattttacttgtgatcacnnnnnnngctcaaactaattcct 404  Q
       | |||||  ||  || |||||||||||||  | ||||||   ||||||||||||||||||||| || | ||||        ||||||||||||||||    
T  47262669 tgggcgtttttcttacattttttttcctttacagttcttctttaccgtggggcccaatatattttaattttaatcattttttttgctcaaactaattcct 47262570  T
Q  405 tttgtttaattaaaaaagaaaaccctt 431  Q
    |||||||||||||||| ||||||||||    
T  47262569 tttgtttaattaaaaatgaaaaccctt 47262543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 35407171 - 35407117
Alignment:
Q  118 cccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||||| ||||||    
T  35407171 cccatagcccgtcggggctgggcgacgacactgggcctcaaatttttgagggccc 35407117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 511
Target Start/End: Complemental strand, 47262494 - 47262460
Alignment:
Q  477 aaactcagaaaccaccacacccacccatatcctca 511  Q
    ||||||| |||||||||||||||||||||||||||    
T  47262494 aaactcataaaccaccacacccacccatatcctca 47262460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 6587790 - 6587730
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  6587790 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 6587730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 16189186 - 16189126
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  16189186 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 16189126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 19893690 - 19893630
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| ||||||||||| ||||  |||||| ||||||| |||||||    
T  19893690 ggccggcccatagcccgtcgaggatgggcgacaacaccgggcctccaattttttggggccc 19893630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 38150391 - 38150451
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  38150391 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 38150451  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 46940020 - 46940080
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  46940020 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 46940080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 193 - 434
Target Start/End: Complemental strand, 17331966 - 17331719
Alignment:
Q  193 gtaaggtcctatagtaagtgttatatagaggtgaaagcaagaacttgtcaaactgttaagaatacttcagtggtagagcgttacgtacaagattgcatgg 292  Q
    |||||||||||| |||||| |||||||||||||||||| |||| ||| ||||||||||| | |||||||||||| ||| |||| || |||||| ||||||    
T  17331966 gtaaggtcctattgtaagtattatatagaggtgaaagcgagaatttgacaaactgttaacactacttcagtggttgagtgttatgtgcaagatcgcatgg 17331867  T
Q  293 ttagaggttcaactcctg--tg----ttttgtt-tatattttttcctttacgttgcttcttgttcgtggggcccaatatattttacttgtgatcacnnnn 385  Q
      |  |||||||||||||  ||    |||| || ||| |||||||||||||  | |||||| | ||||||||||||||||||||| || | ||||         
T  17331866 ccaagggttcaactcctgcttggcatttttcttatattttttttcctttacagttcttcttttccgtggggcccaatatattttaattttaatca-tttt 17331768  T
Q  386 nnngctcaaactaattccttttgtttaattaaaaaagaaaaccctttat 434  Q
       |||||||||||||||||||||||||||||||| | |||||||||||    
T  17331767 tttgctcaaactaattccttttgtttaattaaaaatgtaaaccctttat 17331719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 17332142 - 17332082
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||    
T  17332142 ggccggcccatagcccgtcggggctgggcgaccacactgggcctcaaatttttgggggccc 17332082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 38572983 - 38572923
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || ||||||||||||| ||||||| ||||||| |||||||    
T  38572983 ggccggcccatagcccgtcgaggctgggcgacgacaccaggcctccaattttttggggccc 38572923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 512
Target Start/End: Complemental strand, 17331667 - 17331632
Alignment:
Q  477 aaactcagaaaccaccacacccacccatatcctcag 512  Q
    ||||||| ||||||||||||||||||||||||||||    
T  17331667 aaactcataaaccaccacacccacccatatcctcag 17331632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 17332064 - 17332022
Alignment:
Q  193 gtaaggtcctatagtaagtgttatatagaggtgaaagcaagaa 235  Q
    |||||||||||| |||||| |||||||||||||||||| ||||    
T  17332064 gtaaggtcctattgtaagtattatatagaggtgaaagcgagaa 17332022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 8034582 - 8034522
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  8034582 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggggccc 8034522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 10696006 - 10695946
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  10696006 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 10695946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 14242967 - 14242907
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  14242967 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 14242907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 24596243 - 24596303
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  24596243 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 24596303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 43171578 - 43171638
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  43171578 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 43171638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 41284462 - 41284363
Alignment:
Q  193 gtaaggtcctatagtaagtgttatatagaggtgaaagcaagaacttgtcaaactgttaagaatacttcagtggtagagcgttacgtacaagattgcatgg 292  Q
    |||||||||||||||||||||||||||||||| ||||| || | ||  ||||  ||||||||||||||||||||||||| ||| ||| | ||||||||||    
T  41284462 gtaaggtcctatagtaagtgttatatagaggtaaaagcgagcagttaacaaatggttaagaatacttcagtggtagagcattaagtatatgattgcatgg 41284363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 107 - 427
Target Start/End: Original strand, 15927347 - 15927669
Alignment:
Q  107 accaaggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggcccnnnnnnnnnnnnnnnnnnnngtaaggtcctatag 206  Q
    |||| |||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||                    |||||||||||| |    
T  15927347 accagggccggcccatagcccgtcggggctgggcgacgacactgggcctcaaatttttgggggccc---atatattttttttatatgtaaggtcctattg 15927443  T
Q  207 taagtgttatatagaggtgaaagcaagaacttgtcaaactgttaagaatacttcagtggtagagcgttacgtacaagattgcatggttagaggttcaact 306  Q
    ||||| |||||||||||||||||| |||| ||| |||  |||||| | |||||||||||| |||||||| || |||||  ||||||  |  |||||||||    
T  15927444 taagtattatatagaggtgaaagcgagaatttgacaagttgttaacactacttcagtggttgagcgttatgtgcaagaccgcatggccaagggttcaact 15927543  T
Q  307 cct-----gtgttttgttta--tattttttcctttacgttgcttcttgttcgtggggcccaatatattttacttgtgatcacnnnnnnngctcaaactaa 399  Q
    |||     | |||||  |||  | |||||||||||||  | |||||| | ||||||||||||||||||||| || | ||||        |||||||||||    
T  15927544 cctgctgggcgtttttcttattttttttttcctttacagttcttcttttccgtggggcccaatatattttaattttaatca-tttttttgctcaaactaa 15927642  T
Q  400 ttccttttgtttaattaaaaaagaaaac 427  Q
    ||||||||| ||||||||||| ||||||    
T  15927643 ttccttttg-ttaattaaaaatgaaaac 15927669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 9717282 - 9717342
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||    
T  9717282 ggccggcccatagcccgtcggggctgggcgacgacactgggcctcaaatttttgggggccc 9717342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 193 - 431
Target Start/End: Original strand, 9717360 - 9717614
Alignment:
Q  193 gtaaggtcctatagtaagtgttatatagaggtgaaagcaagaacttgtcaaactgttaagaatacttcagtggtagagcgttacgtacaagattgcatgg 292  Q
    |||||||||||| |||||| |||||||||| ||||||| |||| ||| ||| ||||||| | |||||||||||| |||||||| || |||||  || |||    
T  9717360 gtaaggtcctattgtaagtattatatagagctgaaagcgagaatttgacaagctgttaacactacttcagtggttgagcgttatgtgcaagaccgcttgg 9717459  T
Q  293 ttagaggttcaactcctgt---------------gttttgtttatatttttt-cctttacgttgcttcttgttcgtggggcccaatatattttacttgtg 376  Q
      |  |||||||||||||                |||||  ||||||||||| |||||||  | ||||||   ||||||||||||||||||||| || |     
T  9717460 ccaagggttcaactcctgctgggcgttgctgggcgtttttcttatatttttttcctttacagttcttctttaccgtggggcccaatatattttaatttta 9717559  T
Q  377 atcacnnnnnnngctcaaactaattccttttgtttaattaaaaaagaaaaccctt 431  Q
    ||||        |||||||||||||||||||||||||||||||| ||||||||||    
T  9717560 atcattttttttgctcaaactaattccttttgtttaattaaaaatgaaaaccctt 9717614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 41281851 - 41281784
Alignment:
Q  392 caaactaattccttttgtttaattaaaaaagaaaaccctttatttaatctatgaattatctgtcacaac 460  Q
    ||||| || |||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||    
T  41281851 caaaccaaatccttttgcttaattaaaaaagaaaagccttt-ttgaatctatgaattatctgtcacaac 41281784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 3514511 - 3514451
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||||||| ||||||||||||||||  |||||| ||||||| |||||||    
T  3514511 ggccggcccatagcccatcgaggatgggcgacgacaccgggcctccaattttttggggccc 3514451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 41284539 - 41284479
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| |||||| ||||||| ||||   ||||||||||||||||||||||    
T  41284539 ggccggcccatagcccgtcggggctgggcgatgacatcgggcctcaaatttttgggggccc 41284479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 512
Target Start/End: Original strand, 15927722 - 15927757
Alignment:
Q  477 aaactcagaaaccaccacacccacccatatcctcag 512  Q
    ||||||| ||||||||||||||||||||||||||||    
T  15927722 aaactcataaaccaccacacccacccatatcctcag 15927757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 511
Target Start/End: Original strand, 9717663 - 9717697
Alignment:
Q  477 aaactcagaaaccaccacacccacccatatcctca 511  Q
    ||||||| |||||||||||||||||||||||||||    
T  9717663 aaactcataaaccaccacacccacccatatcctca 9717697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 3466329 - 3466389
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  3466329 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 3466389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 19858315 - 19858255
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  19858315 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggggccc 19858255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 22527641 - 22527581
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  22527641 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 22527581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 25764403 - 25764343
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  25764403 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 25764343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 14123411 - 14123351
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || ||||||||||||| ||||||| ||||||| |||||||    
T  14123411 ggccggcccatagcccgtcgaggctgggcgacgacaccaggcctccaattttttggggccc 14123351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 10582094 - 10582159
Alignment:
Q  107 accaaggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  10582094 accagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 10582159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 37233494 - 37233547
Alignment:
Q  119 ccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    ||||||||| ||| || |||||||||||||| |||||| ||||||| |||||||    
T  37233494 ccatagcccgtcgaggctgggcgacgacactgggcctccaattttttggggccc 37233547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 26426976 - 26426916
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  26426976 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 26426916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 33817706 - 33817646
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  33817706 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggggccc 33817646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 34501289 - 34501229
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  34501289 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 34501229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 1121519 - 1121459
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| ||||||||||||||||  |||||| ||||||| |||||||    
T  1121519 ggccggcccatagcccgtcgaggatgggcgacgacaccgggcctccaattttttggggccc 1121459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 26619166 - 26619226
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  26619166 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 26619226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 16492417 - 16492481
Alignment:
Q  108 ccaaggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||||||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  16492417 ccaaggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 16492481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 38987379 - 38987419
Alignment:
Q  480 ctcagaaaccaccacacccacccatatcctcagacctgcct 520  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  38987379 ctcagaaaccatcacgcccacccatatcctcagacctgcct 38987419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 15382008 - 15381948
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  15382008 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 15381948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 34599770 - 34599710
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
    |||| ||||||||||| ||| || |||||||||||||  |||||| ||||||| |||||||    
T  34599770 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 34599710  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 45463750 - 45463690
Alignment:
Q  112 ggccagcccatagcccatcggggatgggcgacgacactaggcctcaaatttttgggggccc 172  Q
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T  45463750 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggccc 45463690  T

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