View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19160_low_6 (Length: 392)
Name: NF19160_low_6
Description: NF19160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19160_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 40683819 - 40684194
Alignment:
| Q |
1 |
tggaggagcagctcaataacattttacgtggatgtgaggatggagagaaagttgctagtaggaccagtttgtccatgagtttcacccatattgataggcg |
100 |
Q |
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| T |
40683819 |
tggaggagcagctcaataacattttacgtggatatgaggatggagagaaagttgctagtaggaccagtttgtccatgagtttcacccatattgataggcg |
40683918 |
T |
|
| Q |
101 |
gctccaccaaatgttgtttgctgatcgggattatgaaagttatggagtaacaacaacagacgtggaatgtcctccctctttccggccaaaaattacgata |
200 |
Q |
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| T |
40683919 |
gctccaccaaatgttgtttgctgatcgggattatgaaagttatggagtaacaacaacagacgtggaatgtcctccctctttccggccaaaaattacgata |
40684018 |
T |
|
| Q |
201 |
gaatgttgtgaggaaaaaggatactcggtggttaatgtcagatgcaaagatcgcgcaaaactcatgtttgacattgtttgcactcttactgatatgcaat |
300 |
Q |
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| T |
40684019 |
gaatgttgtgaggaaaaaggatactcggtggttaatgtcagatgcaaagatcgcgcaaaactcatgtttgacattgtttgcactcttactgatatgcaat |
40684118 |
T |
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| Q |
301 |
atgttgtttcccatgccacaatctcatcagaccgcccttatgcatcgcaggtatatcacattaacactcgtttctg |
376 |
Q |
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| T |
40684119 |
atgttgtttcccatgccacaatctcatcagaccgcccttatgcatcgcaggtatatcacattaacactcgtttctg |
40684194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 354
Target Start/End: Complemental strand, 10143629 - 10143369
Alignment:
| Q |
100 |
ggctccaccaaatgttgtttgctgatcgggattatgaaagttatgg---agtaacaaca---acagacgtggaatgtcctccctctttccggccaaaaat |
193 |
Q |
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| T |
10143629 |
ggctccaccaaatgttgtttgctgatagggattatgagagtgctggtggagtaacaacagcaacaaatgttgattctcctccctctttcaggcccaatat |
10143530 |
T |
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| Q |
194 |
tacgatagaatgttgtgaggaaaaaggatactcggtggttaatgtcagatgcaaagatcgcgcaaaactcatgtttgacattgtttgcactcttactgat |
293 |
Q |
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| T |
10143529 |
tgaaatagaacgtattgaagaaaaaggctactcagtggttagtgtgagatgcaaagatcgggcaaaattgatgtttgacattgtctgcactcttactgac |
10143430 |
T |
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| Q |
294 |
atgcaatatgttgtttcccatgccacaatctcatcagaccgcccttatgcatcgcaggtat |
354 |
Q |
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| T |
10143429 |
atggaatatgttgtttttcatgcctccatctcatctgatgggccttatgcttcacaggtat |
10143369 |
T |
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