View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19160_low_7 (Length: 365)
Name: NF19160_low_7
Description: NF19160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19160_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 121 - 353
Target Start/End: Complemental strand, 33403491 - 33403259
Alignment:
| Q |
121 |
taataatcaaagattgaatacacttagaaatatcctaaaaaatttgataactagcgtctaagttatatatatgatcgaccatctttgcgaaacataattt |
220 |
Q |
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| T |
33403491 |
taataatcaaagattgaatacacatagaaatatcctaaaaaatttgataactagcgtctaagttatatatatgatcgaccatctttgcgaaacataattt |
33403392 |
T |
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| Q |
221 |
aacgacaaaaatacttttgattgaaaaaacatgttttagtggggcaattgcccttgaatcctatagagtagataggtcctacaagtacatggtgttccct |
320 |
Q |
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| T |
33403391 |
aacgacaaaaatacttttgattgaaaaaacatgttttagtggggcaattgcccttgaatcctatagagtagataggtcctacaagtacatggtgttccct |
33403292 |
T |
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| Q |
321 |
tcacttttaggacgaggtagttaagatgatatt |
353 |
Q |
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| T |
33403291 |
tcacttttaggacgagatagttaagatgatatt |
33403259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 33403565 - 33403479
Alignment:
| Q |
19 |
aaatttgacatatttgcgtaaattattttttcaaaagtacaatgcannnnnnnnggtacaaccaatgcatgtattaataatcaaaga |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
33403565 |
aaatttgacatatttgcgtaaattattttttcaaaagtacaatgcatttttttttatacaatcaatgcatgtattaataatcaaaga |
33403479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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