View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_high_18 (Length: 299)
Name: NF19161_high_18
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 41474917 - 41475186
Alignment:
| Q |
16 |
atgaagagagaaaattagttttattgtttgaatttccacgtgtcatgtgataattagtgtatagtatgtacaatactataagaactgcatatagatatga |
115 |
Q |
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| T |
41474917 |
atgaagagagaaaattagttttattgtttgaatttccacgtgtcatgtgataattagtgtatagtatgtacaatactataagaactgcatatagatatga |
41475016 |
T |
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| Q |
116 |
atgaatatttgtgtatccttagtgaagaagtacccaggtgaggtcacgtttatttcctccgcgttgcgcagaatttctcgtttacctgtaaaactcaaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41475017 |
atgaatatttgtgtatccttagtgaagaagtacccaggtgagttcacgtttatttcctctgcgttgcgcagaatttctcgtttacctgtaaaactcaaca |
41475116 |
T |
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| Q |
216 |
a-----caaatccttcaccaaattcaaaaaccctcttttttctaattcatcacgcaaacgacaccgtttc |
280 |
Q |
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| T |
41475117 |
acaaatcaaatccttcaccaaattcaaaaaccctcttttttctaattcatcacgcaaacgacaccgtttc |
41475186 |
T |
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