View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_high_20 (Length: 283)
Name: NF19161_high_20
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 3714320 - 3714071
Alignment:
| Q |
16 |
atatgaagtatgaaaatcaacatcttactttctagcgtctaatttctgacagagacagtgggatatgaagggtgtgtcatgtcatgttacatggaacctt |
115 |
Q |
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| T |
3714320 |
atatgaagtatgaaaatcaacatcttactttctagcgtctaatttctgacagagacagtgggatatgaagggtgtgtcatgtcatgttacatggaacctt |
3714221 |
T |
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| Q |
116 |
gttgaaatgatatttgtcgcttatgtgaaacctatggttttgtggcaatccgctccctcagatggcatatggtgtatgttccatgtggcatgctcctttg |
215 |
Q |
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| T |
3714220 |
gttgaaatgatatttgtcgcttatgtgaaacctatggttttgtggcaatccgctccctcagatggcatatggtgtatgttccatgtggcatgctcctttg |
3714121 |
T |
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| Q |
216 |
gtgacggtttagccatgctctattgtccccaaaatctcttgtccccacct |
265 |
Q |
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| T |
3714120 |
gtgacggtttagccatgctctattgtccccaaaatctcttgtccccacct |
3714071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 17032469 - 17032583
Alignment:
| Q |
153 |
ttttgtggcaatccgctccctcagatggca-tatggtgtatgttccatgtggcatgctcctttggtgacggtt-tagccatgctctattgtccccaaaat |
250 |
Q |
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| T |
17032469 |
ttttgtggtaatccgctacctcagttggcaatatggtgtatgttccatgtggcatgctcctttggtgacggttctagccttgctttgctgtccccaaaat |
17032568 |
T |
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| Q |
251 |
ctcttgtccccacct |
265 |
Q |
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| T |
17032569 |
ctcttgtccacacct |
17032583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 17032312 - 17032351
Alignment:
| Q |
70 |
acagtgggatatgaagggtgtgtcatgtcatgttacatgg |
109 |
Q |
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| T |
17032312 |
acagtgggttatgaagggtgtgtcttgtcatgttacatgg |
17032351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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