View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_high_6 (Length: 432)
Name: NF19161_high_6
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 18993472 - 18993065
Alignment:
| Q |
13 |
acatgtttctcacgtcgtcgttatatattggaattttggaaccaaacgagctggttcctactccggtgaagtttgttagaaaaaatgaagaatggatgaa |
112 |
Q |
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| T |
18993472 |
acatgtttctcacgtcgtcgttatatattggaactttggaaccaaatgagctggttccaactccggtgaagtttgttagaaaaaatgaagaatggatgaa |
18993373 |
T |
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| Q |
113 |
gaatttggaagataatttatcattaagctggatcatcatcgacccgactggaaaacgttcagcgaacgtttccagccggaagccggtattagtacgacgt |
212 |
Q |
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| T |
18993372 |
gaatttggaagagaatttatcattaagctggattatcatcgacccgactggaaaacgttcagcgaacgtttccagccggaagccggtattagtacgacgt |
18993273 |
T |
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| Q |
213 |
cactggctaacaagagacatggagattcttttcgcggtgacaatggcgggagagacacgacgatcaaccgagatggtgcagtgtatggtgaaggtgacat |
312 |
Q |
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| T |
18993272 |
cactggctaacaagagacatggagattcttttcgcggtgacaatggcgggagagacacgacgatcaaccgagatggtccagtgtatggtgaaggtgacat |
18993173 |
T |
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| Q |
313 |
gttgtgggaaagttgggggtgaattgtacatgagggaggtgagtttagtgatggaggatatggaaggaggggaggttagtgggaaagaaggggttgggat |
412 |
Q |
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| T |
18993172 |
gttgtgggaaagttgggggtgaattgtacatgagggaggtgagtttagtaatggaggatatggaaggaggggaggttagtgggaaagaaggggttgggat |
18993073 |
T |
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| Q |
413 |
attgatga |
420 |
Q |
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| T |
18993072 |
attgatga |
18993065 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 36516646 - 36516695
Alignment:
| Q |
285 |
atggtgcagtgtatggtgaaggtgacatgttgtgggaaagttgggggtga |
334 |
Q |
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| T |
36516646 |
atggtgcagtgtatggtgaaggtcacgtgctgtgggaaagttgggggtga |
36516695 |
T |
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