View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_10 (Length: 397)
Name: NF19161_low_10
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 872718 - 872529
Alignment:
| Q |
1 |
aataaactcaaaaaactgtgaaatcaagaattttgaagaatattataatgaaaaaatgacagacaaaaattatattttacaaatcaaaattattactagt |
100 |
Q |
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| T |
872718 |
aataaactcaaaaaactgtgaaatcaagaattttgaagaatattataatgaaaaaatgacagacaaaaattatattttacaaatcaaaattattactagt |
872619 |
T |
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| Q |
101 |
tttgtggtatatttatcacaaaatcttctgatttgaagaattcatcgtagtctttgcgttggaaaataaacaacttttttccatggtaat |
190 |
Q |
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| T |
872618 |
ttcgtggtatatttatcacaaaatcttctgatttgaagaattcatcgtagtgtttgcgttggaaaataaacaacttttttccatggtaat |
872529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 872482 - 872377
Alignment:
| Q |
264 |
ttgaggatattttcaaactcttaacaatcaaattttggtcaacaccgtgattgaaaaccatgaagccttgcgtcatgcatgtttcccttacaatgtccag |
363 |
Q |
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| T |
872482 |
ttgaggatattttcaaactcttaacaatcaaattttggtcaacaccgtgattgaaaaccatgaagccttgcgtcatgcatgtttcccttacaatgtccag |
872383 |
T |
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| Q |
364 |
aataat |
369 |
Q |
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| T |
872382 |
agtaat |
872377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 872529 - 872499
Alignment:
| Q |
235 |
tagcccatggaggccttatagaaccaacttt |
265 |
Q |
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| T |
872529 |
tagcccatggaggccttatagaaccaacttt |
872499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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