View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_11 (Length: 381)
Name: NF19161_low_11
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 45735628 - 45735334
Alignment:
| Q |
17 |
gttgacactatacgaaccataacatttcaatgcgtttgggcaaatcaaaaagaaaggtggaacatgcttaaccactttgctgggaacacaatgtggtgca |
116 |
Q |
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| T |
45735628 |
gttgacactatacgaaccataacatttcaatgcgtttgggcaaataaaaaagaaaggtggaacatgcttagccactttgctgggaacaaaatgtggtgca |
45735529 |
T |
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| Q |
117 |
gtgagataaaaatagtggaagcttgcatatatgccaccaaaacatttagcatacatcattatagcctctcaccattgttaaatagttacaaactataac- |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45735528 |
gtgagataaaaatagtggaagcttgcatatatgccaccaaaacatttagcatacatcattatagcctctcaccattgttaaatagttacaaactataaca |
45735429 |
T |
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| Q |
216 |
aaatggacctaacttattaatgttttgaaaatatatagactatattgatatgagtagtgtctaattttcatgacaaatattgaatgtcatatact |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45735428 |
aaatggacctaacttattaatgttttgaaaatatatagactatattgatatgagtagtgtctaattttcatgacaaatattgaatgtcatatact |
45735334 |
T |
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