View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_12 (Length: 380)
Name: NF19161_low_12
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 365
Target Start/End: Complemental strand, 40220276 - 40219925
Alignment:
| Q |
14 |
aggcggtgaggtgggtgcggcaagttcacttgctccgaaaatcggtccactcggtctctccccaaaaaagataggagaagacattgctaaggtgactgcc |
113 |
Q |
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| T |
40220276 |
aggcggtgaggtgggtgcggcaagttcacttgctccgaaaatcggtccactcggtctctccccaaaaaagataggagaagacattgctaaggtgactgcc |
40220177 |
T |
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| Q |
114 |
aaagactggaagggtataagggtgacagccaagctcatcgtgcaaaatcgtcaggcggagattgaggtggttccttcggcatctgcacttgtcatcaagg |
213 |
Q |
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| T |
40220176 |
aaagactggaagggtatcagggtgacagccaagctcatcgtgcaaaatcgtcaggcggagattgaggtggttccttcggcatctgcacttgtcatcaagg |
40220077 |
T |
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| Q |
214 |
cgttgaaagagccggagcgtgaccgcaagaagaccaagcatatcaaccacaatgggaacatatcccttgaggatgtcattgacattgctagggttatgag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220076 |
cgttgaaagagccggagcgtgaccgcaagaagaccaagcatatcaaccacaatgggaacatatcccttgaggatgtcattgacattgctagggttatgag |
40219977 |
T |
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| Q |
314 |
tccgaggtcgatggcgaagaaactttctggcactgttaatgaggttcttggt |
365 |
Q |
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| T |
40219976 |
tccgaggtcgatggcgaagaaactttctggcactgttaatgaggttcttggt |
40219925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 21783186 - 21783502
Alignment:
| Q |
15 |
ggcggtgaggtgggtgcggcaagttcacttgctccgaaaatcggtccactcggtctctccccaaaaaagataggagaagacattgctaaggtgactgcca |
114 |
Q |
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| T |
21783186 |
ggcggtgaagtcggagccgccagttccctcgctcccaagatcggtcctctcggtctctcaccaaagaagatcggagaagacatcgccaaagaaaccgcaa |
21783285 |
T |
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| Q |
115 |
aagactggaagggtataagggtgacagccaagctcatcgtgcaaaatcgtcaggcggagattgaggtggttccttcggcatctgcacttgtcatcaaggc |
214 |
Q |
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| || ||||||||| | |||||||||| |||||||| ||| || ||||||||||| || | | || ||||| || || |||| || || |||||||| |
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| T |
21783286 |
aggattggaagggtctgagggtgacagtcaagctcaccgttcagaatcgtcaggctaaggtcgctgttgttccgtctgcggctgcgctggttatcaaggc |
21783385 |
T |
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| Q |
215 |
gttgaaagagccggagcgtgaccgcaagaagaccaagcatatcaaccacaatgggaacatatcccttgaggatgtcattgacattgctagggttatgagt |
314 |
Q |
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| T |
21783386 |
tttgaaggaaccagaaagggatcgcaagaagactaagaacatcaagcataatgggaatatctctcttgatgatgttattgagattgcaaagattatgaag |
21783485 |
T |
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| Q |
315 |
ccgaggtcgatggcgaa |
331 |
Q |
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||||||||||||||||| |
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| T |
21783486 |
ccgaggtcgatggcgaa |
21783502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 332
Target Start/End: Original strand, 28372264 - 28372560
Alignment:
| Q |
36 |
agttcacttgctccgaaaatcggtccactcggtctctccccaaaaaagataggagaagacattgctaaggtgactgccaaagactggaagggtataaggg |
135 |
Q |
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||||| || ||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| || || | || || ||||||||||||||| | | | |
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| T |
28372264 |
agttccctcgctcccaagatcggaccactcggtctctctccaaaaaagatcggagaagacatcgccaaagaaaccgcaaaagactggaagggtctccgtg |
28372363 |
T |
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| Q |
136 |
tgacagccaagctcatcgtgcaaaatcgtcaggcggagattgaggtggttccttcggcatctgcacttgtcatcaaggcgttgaaagagccggagcgtga |
235 |
Q |
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| T |
28372364 |
tcacagtcaagctcaccgtccagaatcgtcaagcgaaggttgcggttgttccctccgcggcggcgctggtgattaaggcattgaaggaaccagagagaga |
28372463 |
T |
|
| Q |
236 |
ccgcaagaagaccaagcatatcaaccacaatgggaacatatcccttgaggatgtcattgacattgctagggttatgagtccgaggtcgatggcgaag |
332 |
Q |
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| T |
28372464 |
taggaagaagactaagaatattaagcataatgggaatatttcgcttgatgatgttattgagattgcgaagattatgaagccgagatctatggcgaag |
28372560 |
T |
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