View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_13 (Length: 375)
Name: NF19161_low_13
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 41074992 - 41075355
Alignment:
| Q |
1 |
gtgttgacacagtttagtagtagtttgaatgcaaatacttggagtgattggtgtgctggtgaagagtgctcattgtagtatgaattatattcaacgagag |
100 |
Q |
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| T |
41074992 |
gtgttgacacagtttagtagtagtttgaatgcaaatacttggagtgattggtgtgctggtgaagagtgctcattgtagtatgaattatatttaacgagag |
41075091 |
T |
|
| Q |
101 |
cttgtatgcttggattatttggtggtttttaagcatgtctgtgttactactttcaaggagtaacaaaggttattggtaccatgaaggcaaatttgattgg |
200 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41075092 |
cttgtatgcttggattatttggtgatttttaagtatgtctgtgttactactttcaaggagtaacaaaggttattggtaccataaaggcaaatttgattgg |
41075191 |
T |
|
| Q |
201 |
tatccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcc |
300 |
Q |
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| T |
41075192 |
tatccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcc |
41075291 |
T |
|
| Q |
301 |
tggttccttttggactatcttaagggtctggtctaagtggt----ggaatacttatgtgtgtat |
360 |
Q |
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| T |
41075292 |
tgattccttttggactatcttaagtgtctggtctaagtggtgaaaggaatacttatgtgtgtat |
41075355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 360
Target Start/End: Original strand, 41086486 - 41086836
Alignment:
| Q |
2 |
tgttgacacagtttagtagtagtttgaatgcaaatacttggagtgattggtgtgctggtgaagagtgctcattgtagtatgaattatattcaacgagagc |
101 |
Q |
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| T |
41086486 |
tgttaacacagttcagtagcagtttgaatgcaaatacttgaagtgattggtgtgctggtgaagagtgctcattgtattatgtattatatttaaccagagt |
41086585 |
T |
|
| Q |
102 |
ttgtatgcttggattatttggtggtttttaagcatgtctgtgttactactttcaaggagtaacaaaggttattggtaccatgaaggcaaatttgattggt |
201 |
Q |
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|||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| |
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| T |
41086586 |
ttgtatgcttggattatttggtagtttttaagtatgt-----ttactactttcaaggagta-caaaggat---ggtaccatgaaggcaaatttgattggt |
41086676 |
T |
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| Q |
202 |
atccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcct |
301 |
Q |
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| T |
41086677 |
atccggttattgattggttgtttttttgagtatacatgagtgaggtacctattcctctgaattcataatggaggtgttgctagtgtattagagttctcct |
41086776 |
T |
|
| Q |
302 |
ggttcc-ttttggactatcttaagggtctggtctaagtggtggaatacttatgtgtgtat |
360 |
Q |
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|||||| ||||||||||| |||||||||||| ||| |||||||||||| |||||||||| |
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| T |
41086777 |
ggttcctttttggactattgtaagggtctggtgtaaatggtggaatactgatgtgtgtat |
41086836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 110 - 360
Target Start/End: Original strand, 48297170 - 48297418
Alignment:
| Q |
110 |
ttggattatttggtggtttttaagcatgtctgtgttactactttcaaggagtaacaaaggttattggtaccatgaaggcaaatttgattggtatccggtt |
209 |
Q |
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|||||||||||||||||||||||| |||| | |||| |||||||||||||| |||||||||| |||| | |||| ||||||||||||||||| || |
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| T |
48297170 |
ttggattatttggtggtttttaagtatgtttatgtttctactttcaaggagcaacaaaggtt---ggtatccgaaaggaaaatttgattggtatcctatt |
48297266 |
T |
|
| Q |
210 |
attgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcctggttcctt |
309 |
Q |
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||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
48297267 |
attgattggctgttttttggagtatacatgattgaggtacctattcctatgaattcatgatggaggtgatgctagtgtattagagttctcctagttcctt |
48297366 |
T |
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| Q |
310 |
-ttggactatcttaagggtctggtctaagtggtggaatacttatgtgtgtat |
360 |
Q |
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||||| ||| ||||||||| || |||| |||||||||||||||||||||| |
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| T |
48297367 |
cctggaccatcgtaagggtctagtgtaagcggtggaatacttatgtgtgtat |
48297418 |
T |
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