View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19161_low_16 (Length: 345)

Name: NF19161_low_16
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19161_low_16
NF19161_low_16
[»] chr2 (1 HSPs)
chr2 (5-326)||(44146940-44147261)
[»] scaffold0036 (1 HSPs)
scaffold0036 (111-320)||(7169-7369)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 326
Target Start/End: Complemental strand, 44147261 - 44146940
Alignment:
Q  5 ggtagattatacttgctttagttgtgtatctaattgaaaactaaatcatacaacaagaggaccctgcattatctgaatagtgcatagatttagcgagagt 104  Q
    |||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44147261 ggtaaattaaacttgctttagttgtgtttctaattgaaaactaaatcatacaacaagaggaccctgcattatcttaatagtgcatagatttagcgagagt 44147162  T
Q  105 caatattcaataacaacaaatagattcaattcaactagtacacagatgatggaggatggtatcatgtaatcttacatcttttaagtatttaatactagct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  44147161 caatattcaataacaacaaatagattcaattcaactagtacacagatgatggaggatggcatcatgtaatcttacatcttttaattatttaatactagct 44147062  T
Q  205 gtgttggattattgttaattggttaattatttctcaatcaatttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttct 304  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44147061 gtgttggattattgttaattggttaattattcctcaatcaatttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttct 44146962  T
Q  305 gcacgggcttggagctcgaacg 326  Q
    ||||||||||||||||||||||    
T  44146961 gcacgggcttggagctcgaacg 44146940  T

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Target: scaffold0036 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 320
Target Start/End: Complemental strand, 7369 - 7169
Alignment:
Q  111 tcaataacaacaaatagattcaattcaactagtacacagatgatggaggatggtatcatgtaatcttacatcttttaagtatttaatactagctgtgttg 210  Q
    |||||| ||||||||||||||||||  | || ||||||||| |||||||||||| | |||||||   |||||||| ||| |||| ||||||||| |||||    
T  7369 tcaatagcaacaaatagattcaatt--agta-tacacagataatggaggatggtgttatgtaataccacatctttgaagcatttcatactagctatgttg 7273  T
Q  211 gattattgttaattggttaattatttctcaatcaa-tttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttctgcacg 309  Q
     |||| ||||       ||||||||  |||||||| |||||| ||||||||||||||||||| ||||  | ||||||| ||||||||||||||||||||     
T  7272 aattagtgtt-------taattattcttcaatcaactttccggcttgttgattcattttcttctctgcactaaatttgtggcaggaaaagtttctgcacc 7180  T
Q  310 ggcttggagct 320  Q
    | |||||||||    
T  7179 gacttggagct 7169  T

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