View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19161_low_17 (Length: 334)

Name: NF19161_low_17
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19161_low_17
NF19161_low_17
[»] chr6 (18 HSPs)
chr6 (13-318)||(21150060-21150351)
chr6 (233-308)||(21181559-21181634)
chr6 (92-175)||(21219957-21220041)
chr6 (214-279)||(21352233-21352299)
chr6 (251-314)||(31106485-31106548)
chr6 (13-131)||(21168776-21168894)
chr6 (16-98)||(21184153-21184235)
chr6 (235-309)||(21267154-21267228)
chr6 (236-314)||(31094768-31094846)
chr6 (217-285)||(21190469-21190538)
chr6 (235-307)||(21136783-21136855)
chr6 (186-303)||(21147277-21147401)
chr6 (30-116)||(21244958-21245044)
chr6 (13-96)||(21176017-21176101)
chr6 (240-307)||(21233462-21233530)
chr6 (225-277)||(21313062-21313114)
chr6 (186-243)||(21184371-21184429)
chr6 (218-303)||(21279840-21279926)
[»] scaffold0016 (3 HSPs)
scaffold0016 (233-314)||(65194-65275)
scaffold0016 (200-278)||(74842-74921)
scaffold0016 (13-73)||(65445-65505)
[»] scaffold0060 (1 HSPs)
scaffold0060 (229-289)||(20109-20168)
[»] scaffold0202 (1 HSPs)
scaffold0202 (236-314)||(3484-3562)
[»] chr8 (1 HSPs)
chr8 (248-301)||(24944361-24944414)
[»] scaffold0272 (1 HSPs)
scaffold0272 (274-314)||(3455-3495)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 21150060 - 21150351
Alignment:
Q  13 taggtaaattttcctatttgttgttaaagcactatcgatgtgggactattgacaccaaactctagagttctaactgagaatgtgtatatggtattcttta 112  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||| |||||||||||||||||| |  |||||||||||||||||||||| |||||||    
T  21150060 taggtaaattttcctctttgttgttaaagcatcatcgatgtgggactgttgacaccaaactctagaatcataactgagaatgtgtatatggttttcttta 21150159  T
Q  113 aaacttcgaaccattcaataaatccaactgataaaggaatccatgatacaaataaatccaattgataaaaaacgagaaattgaggaaaaaattgaggatc 212  Q
    |||| | ||||||||||||  |||||| |||||||         | | ||||||||| |||||||||||  | ||||||||||||||||| |||||        
T  21150160 aaacattgaaccattcaatggatccaattgataaa---------gttgcaaataaatacaattgataaatgaagagaaattgaggaaaaagttgag---- 21150246  T
Q  213 caaagtctaatg-taaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatat 311  Q
      |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||    
T  21150247 --aagtctaatgttaaggaagaagagaataatgaagatgctttattagatgcacatgaaacactctcacatttaacataatcaatttaaatacattatat 21150344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 21181559 - 21181634
Alignment:
Q  233 aggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacatta 308  Q
    |||||||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  21181559 aggagaataatgatgatgcttttttagatgctcatgaaacattgtcacatttaacataatcatttttaatacatta 21181634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 21219957 - 21220041
Alignment:
Q  92 atgtgtatatggtattctttaaaacttcgaaccattcaataaatccaactgataaaggaatc-catgatacaaataaatccaatt 175  Q
    |||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||  ||| | |||||||||||||||    
T  21219957 atgtgtatatggtattctttaaaattttgaaccattcaatcaatccaattgataaaggaatctaatgttgcaaataaatccaatt 21220041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 21352233 - 21352299
Alignment:
Q  214 aaagtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtca 279  Q
    |||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||    
T  21352233 aaagtctaatgttaaggaagtggagaatgatgaacatgttttattagatgcacataaaacattgtca 21352299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 31106548 - 31106485
Alignment:
Q  251 ctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 314  Q
    |||| |||||||||||||||||| | |||||||||||| ||||||||||||| |||||| ||||    
T  31106548 cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatt 31106485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 21168776 - 21168894
Alignment:
Q  13 taggtaaattttcctatttgttgttaaagcactatcgatgtgggactattgacaccaaactctagagttctaactgagaatgtgtatatggtattcttta 112  Q
    |||||||||||||||  | ||||||   ||||  ||||||||||||  ||||| ||||| |||||||| ||| ||||||| ||||||  |||||||||||    
T  21168776 taggtaaattttcctcctggttgttttcgcacagtcgatgtgggaccgttgaccccaaattctagagtgctagctgagaaagtgtatccggtattcttta 21168875  T
Q  113 aaacttcgaaccattcaat 131  Q
    |||| | |||| |||||||    
T  21168876 aaacattgaactattcaat 21168894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 21184153 - 21184235
Alignment:
Q  16 gtaaattttcctatttgttgttaaagcactatcgatgtgggactattgacaccaaactctagagttctaactgagaatgtgta 98  Q
    |||||||||||||||| |||||||||||| | | ||||| |||| |||||||||| ||||||||| |||  ||| ||||||||    
T  21184153 gtaaattttcctatttcttgttaaagcaccaccaatgtgagactgttgacaccaagctctagagtgctagttgataatgtgta 21184235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 21267154 - 21267228
Alignment:
Q  235 gagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattat 309  Q
    |||||||||||| ||| ||| |||||||||||| |||||  ||||| || |||||||||||||||||| ||||||    
T  21267154 gagaatgatgaaaatgattttttagatgcacataaaacaccgtcactttcaacataatcattttaaatgcattat 21267228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 31094768 - 31094846
Alignment:
Q  236 agaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 314  Q
    |||||||||| ||| |||| ||||||||||||||| ||  ||| ||||||||| || ||||||||||||||||| ||||    
T  31094768 agaatgatgatgatacttttttagatgcacatgaagcaccgtcgcatttaacaaaaccattttaaatacattatgtatt 31094846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 21190469 - 21190538
Alignment:
Q  217 gtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacattta 285  Q
    ||||||||| |||||||| |||||  || |||||||||| ||||||| ||||||||||||||||||||||    
T  21190469 gtctaatgttaaggaagatgagaacaattaagatgcttttttagatgaacatgaaacattgtcacattta 21190538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 21136783 - 21136855
Alignment:
Q  235 gagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacatt 307  Q
    |||||||||||| ||||||| |||||||||||| ||||| ||||||  |||||||| | ||||||||| ||||    
T  21136783 gagaatgatgaaaatgcttttttagatgcacataaaacagtgtcactcttaacatattaattttaaatgcatt 21136855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 303
Target Start/End: Original strand, 21147277 - 21147401
Alignment:
Q  186 gagaaattgaggaaaaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatg-ctttattagatgcacatg-----aaacattgtc 278  Q
    |||||||||| |||||| ||||| ||  |||||||||||| ||||||||||||||||||||  |||  ||| || ||||||||||     ||||| ||||    
T  21147277 gagaaattgacgaaaaagttgagaatagaaagtctaatgttaaggaagaggagaatgatgactatgttttttttggatgcacatgacataaaacaatgtc 21147376  T
Q  279 acatttaacataatcattttaaata 303  Q
    ||||| |||| ||||||||||||||    
T  21147377 acattaaacagaatcattttaaata 21147401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 21245044 - 21244958
Alignment:
Q  30 ttgttgttaaagcactatcgatgtgggactattgacaccaaactctagagttctaactgagaatgtgtatatggtattctttaaaac 116  Q
    ||||| ||||||| | ||||  ||||||||||||| ||||||||| | ||| | | ||||||||||||||||  |||||||||||||    
T  21245044 ttgtttttaaagctcaatcggcgtgggactattgaaaccaaactccatagtgcaagctgagaatgtgtatattctattctttaaaac 21244958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 21176017 - 21176101
Alignment:
Q  13 taggtaaattttcctattt-gttgttaaagcactatcgatgtgggactattgacaccaaactctagagttctaactgagaatgtg 96  Q
    ||||||||||||||| ||| ||||||  |||||  ||||||||||||||||||||||||| |  | ||| ||| |||||||||||    
T  21176017 taggtaaattttcctcttttgttgtttcagcacagtcgatgtgggactattgacaccaaatttcatagtgctagctgagaatgtg 21176101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 21233462 - 21233530
Alignment:
Q  240 tgatgaagatgctttatta-gatgcacatgaaacattgtcacatttaacataatcattttaaatacatt 307  Q
    ||||||||||| ||| ||| ||||| ||||||||||| |||||||||||| ||||||| |||| |||||    
T  21233462 tgatgaagatgtttttttatgatgcgcatgaaacattttcacatttaacagaatcattataaacacatt 21233530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 21313062 - 21313114
Alignment:
Q  225 taaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgt 277  Q
    |||||||||||| ||||| ||||||||||  ||||||||||| ||||||||||    
T  21313062 taaggaagaggacaatgacgaagatgcttctttagatgcacacgaaacattgt 21313114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 21184371 - 21184429
Alignment:
Q  186 gagaaattgaggaaaaaattgaggatccaaagtctaatg-taaggaagaggagaatgat 243  Q
    ||||||||||||||||| ||||| ||  ||||||| ||| |||||||||||||||||||    
T  21184371 gagaaattgaggaaaaagttgagaatagaaagtctgatgttaaggaagaggagaatgat 21184429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 21279840 - 21279926
Alignment:
Q  218 tctaatgtaaggaa-gaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaata 303  Q
    |||||||||| ||| || |||||||||||||||||||| | ||||  |||||||||  |||||| | ||| | ||||||||||||||    
T  21279840 tctaatgtaaagaaagatgagaatgatgaagatgctttttaagatatacatgaaactgtgtcacgtataatagaatcattttaaata 21279926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 65275 - 65194
Alignment:
Q  233 aggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 314  Q
    |||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  65275 aggagaatgatgaagatgcttttttaaatgcacatgaaacactatcacatttaacataatcattgtaaatacattatatatt 65194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 74921 - 74842
Alignment:
Q  200 aaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtc 278  Q
    ||||||||| ||  |||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  74921 aaaattgagaatagaaagtctaatgttaaggaagaggagaataatgaaggtgctttattagatgaacatgaaacattgtc 74842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 65505 - 65445
Alignment:
Q  13 taggtaaattttcctatttgttgttaaagcactatcgatgtgggactattgacaccaaact 73  Q
    |||||||||| ||||||| ||| || || ||| ||||||||||||||||||| ||||||||    
T  65505 taggtaaattgtcctattggttttttaaacaccatcgatgtgggactattgaaaccaaact 65445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 20109 - 20168
Alignment:
Q  229 gaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacat 289  Q
    ||||||||||||||||| | |||||| |||||||||||||||| |||||||||| ||||||    
T  20109 gaagaggagaatgatgatgttgcttt-ttagatgcacatgaaagattgtcacatataacat 20168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 3484 - 3562
Alignment:
Q  236 agaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 314  Q
    ||||||| || ||| |||| ||||| ||||||||| || || ||||||||||| || ||||||||||||||||| ||||    
T  3484 agaatgacgatgatacttttttagaagcacatgaagcactgccacatttaacaaaaccattttaaatacattatgtatt 3562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 24944361 - 24944414
Alignment:
Q  248 atgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaa 301  Q
    ||||||| | |||||||||| ||| |||||||||||||||| ||||||| ||||    
T  24944361 atgctttttcagatgcacataaaatattgtcacatttaacaaaatcattataaa 24944414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 3495 - 3455
Alignment:
Q  274 ttgtcacatttaacataatcattttaaatacattatatatt 314  Q
    ||||||||||||||| ||||||||| |||||||||| ||||    
T  3495 ttgtcacatttaacagaatcattttgaatacattatgtatt 3455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University