View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19161_low_18 (Length: 316)
Name: NF19161_low_18
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 10759931 - 10759669
Alignment:
| Q |
1 |
ccttacatgtcgctttggttcttatatgtgcatcccaaaattattacgtagatttcaaaccatgcatatcaactcacttaaatatgtaaataaaa-tcta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10759931 |
ccttacatgtcgctttggttcttatatgtgcatcccaaaattattacgtagatttcaaaccatgcatatcaactcacttaaatatgtaaataaaaatcta |
10759832 |
T |
|
| Q |
100 |
aatacgcattttggtaattggtatatattaatctaaatatatatgtgcaatgtataacttttcgtaaatgatatcaagtgaaaataatagtctttggatt |
199 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10759831 |
aatacgcattttggtaatc--tatatat--------atatatatgcgcaatgtataacttttcgtaaatgatatcaagtgaaaataatagtctttggatt |
10759742 |
T |
|
| Q |
200 |
taaaatcgggggtcaagattagaaggctcattatctctactgtatatgggtttttcaaattctagaatttttg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
10759741 |
taaaatcgggggtcaagattagaaggctcattatctctactgtatatgggtttttcaaattccaaaatttttg |
10759669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University