View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19161_low_2 (Length: 678)

Name: NF19161_low_2
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19161_low_2
NF19161_low_2
[»] chr8 (14 HSPs)
chr8 (255-660)||(3001602-3002022)
chr8 (60-404)||(2711538-2711882)
chr8 (60-400)||(2988861-2989201)
chr8 (15-223)||(3002021-3002229)
chr8 (64-402)||(3142422-3142763)
chr8 (60-372)||(9851352-9851667)
chr8 (168-378)||(2916491-2916701)
chr8 (238-404)||(2979945-2980111)
chr8 (154-381)||(2911477-2911704)
chr8 (162-382)||(13790825-13791045)
chr8 (308-382)||(3282983-3283057)
chr8 (484-554)||(2978920-2978990)
chr8 (162-227)||(3282852-3282917)
chr8 (13-41)||(2711491-2711519)
[»] chr6 (1 HSPs)
chr6 (60-400)||(18355258-18355598)
[»] chr1 (1 HSPs)
chr1 (60-404)||(10755912-10756256)
[»] chr7 (1 HSPs)
chr7 (60-381)||(3919404-3919728)
[»] scaffold0065 (2 HSPs)
scaffold0065 (60-402)||(44973-45317)
scaffold0065 (60-380)||(50163-50486)
[»] chr4 (1 HSPs)
chr4 (176-404)||(8572564-8572792)
[»] chr3 (1 HSPs)
chr3 (176-404)||(28698524-28698752)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 255 - 660
Target Start/End: Complemental strand, 3002022 - 3001602
Alignment:
Q  255 gctcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaa 354  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  3002022 gctcttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccataacaccattaatccttccaaa 3001923  T
Q  355 ttcacgaaaggctgcagaagccaacctacgaaaacaaaattttcagcaaataaaatcactgttttcattttgacatcccttgtacaaattttaagaaaac 454  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3001922 ttcatcaaaggctgcagaagccaacctacgaaaacaaaattttcagcaaataaaatcactgttttcattttgacatcccttgtacaaattttaagaaaac 3001823  T
Q  455 tc--atgtatgaatcatgataataaaaggtcgaaaatgaagtcacctattaatgaggcgtgtagcaacaccgtatgcaatatgtgcagtcatccttcaaa 552  Q
    ||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3001822 tcatatgtatgaatcatgataataaaaggttgaaaatgaagtcacctattaatgaggcgtgtagcaacaccgtatgcaatatgtgcagtcatccttaaaa 3001723  T
Q  553 a-------------acaaaggcaagcacatggattaacaggaagattgaaaattttgcagagtttgataattgcaatcaatatgtaggaaaaacattgat 639  Q
    |             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3001722 aagagacacacaagacaaaggcaagcagatggattaacaggaagattgaaaattttgcagagtttgataattgcaatcaatatgtaggaaaaacattgat 3001623  T
Q  640 ggaccaagggaagtgcctagt 660  Q
    |||||||||||||||||||||    
T  3001622 ggaccaagggaagtgcctagt 3001602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 60 - 404
Target Start/End: Original strand, 2711538 - 2711882
Alignment:
Q  60 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 159  Q
    |||||||||||||||||||| |||||||||||||||||||||  || ||||||||||||||||| ||||||||||| |||| ||||||||| ||||| ||    
T  2711538 caatctcatgagccattttacggcgaaaagcagctctgcttatggataaggaatgaaatacctgagtcactttgttgttatgagctttatcccttttatg 2711637  T
Q  160 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctct 259  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2711638 tatcatatcttcaataagaaactcatctatcaaatcatcagcaggaagaagcacatctttgagccttctaacccagttttgtacagcatgactttgctct 2711737  T
Q  260 tgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcac 359  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||| ||||||||||| |||||    
T  2711738 tgtttgtcttcagcatcaaggaggacagctttgatggattcaactgtgttcttgagtatttccaattcatccataacaccataaatccgtccaagttcac 2711837  T
Q  360 gaaaggctgcagaagccaacctacgaaaacaaaattttcagcaaa 404  Q
    ||||||| |||||||||||||| |||| | ||||| || ||||||    
T  2711838 gaaaggccgcagaagccaacctgcgaacagaaaatatttagcaaa 2711882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 60 - 400
Target Start/End: Complemental strand, 2989201 - 2988861
Alignment:
Q  60 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 159  Q
    |||||||||||||||||||| |||||||||||| ||||||| |  |||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||    
T  2989201 caatctcatgagccattttacggcgaaaagcagttctgcttggtaagaaggaatgaattacctgtgtcactttgttcttatgagctttatcccgtttgtg 2989102  T
Q  160 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctct 259  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||| |||||| ||||    
T  2989101 tatcatatcttcaataagaaactcatctatcaaatcatctgcaggaagaagcacgtctttgagccttcttacccagacttgtacagcaggacttttctct 2989002  T
Q  260 tgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcac 359  Q
    |||||||| ||||||| |||||| |||||| |||||  ||||| |||||| ||||| ||||| ||||||||||| ||||||| ||| |||||||||||||    
T  2989001 tgtttctcctcagcatcaaggagtacagctctgatgacttcaattgtgtttttaagtctttctaattcatccatgacaccataaattcgtccaaattcac 2988902  T
Q  360 gaaaggctgcagaagccaacctacgaaaacaaaattttcag 400  Q
    ||||||||||||||||||||||| ||| | ||||| |||||    
T  2988901 gaaaggctgcagaagccaacctatgaagagaaaatattcag 2988861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 3002229 - 3002021
Alignment:
Q  15 cagacatatctttcacaacatcattaaaacnnnnnnnnnnnnnnncaatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatg 114  Q
    ||||||||||||||||||||||||||||||               |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  3002229 cagacatatctttcacaacatcattaaaacttttttgtattttttcaatctcaagagccattttatggcaaaaagcagctctgcttagagagaaggaatg 3002130  T
Q  115 aaatacctgtgtcactttgttcttatcagctttatctcttttgtgtatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacg 214  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  3002129 aaatacctgtgtcactttgttcttatcagctttatcccttttgtgtatcatatcttcaataagaaactcatctatcaaatcaacagcaggaagaagcacg 3002030  T
Q  215 tctttgagc 223  Q
    |||||||||    
T  3002029 tctttgagc 3002021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 64 - 402
Target Start/End: Original strand, 3142422 - 3142763
Alignment:
Q  64 ctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtgtatc 163  Q
    ||||| |||||||||| ||| |||||||  |||  |  |||| || |||||||  |||||||| ||||||||||||  ||||| ||| | ||| ||| ||    
T  3142422 ctcataagccattttacggctaaaagcaattctattcggagataaagaatgaagcacctgtgttactttgttcttacgagcttcatcccgtttttgtctc 3142521  T
Q  164 atatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtc---tttgagccttctaacccagttttgtacagcatgactttgctctt 260  Q
    || ||||| |||  ||||||||||| ||| |||||||||||| |||| || ||   |||||| ||||| | |||| |||||||||||||||||| |||||    
T  3142522 atgtcttcgatagcaaattcatctagcaagtcatcagcaggatgaagtacatcatctttgagtcttcttatccagatttgtacagcatgacttttctctt 3142621  T
Q  261 gtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacg 360  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  3142622 gtttgtcttcagcatcaaggagcacagctttgatggattcaactgtgtttttaagcctttccagttcatccatcacaccataaatccgtccaaattcacg 3142721  T
Q  361 aaaggctgcagaagccaacctacgaaaacaaaattttcagca 402  Q
    |||||| || |||||||||||   |||| ||||||| |||||    
T  3142722 aaaggccgctgaagccaacctgacaaaagaaaatttccagca 3142763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 60 - 372
Target Start/End: Original strand, 9851352 - 9851667
Alignment:
Q  60 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 159  Q
    |||||||||  ||||||||| ||||||||| |  | || || |||| |||||||||| ||||| ||| ||||||||||||| || || |||  ||||||     
T  9851352 caatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttactttgttcttatgagtttcatccattttgtt 9851451  T
Q  160 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgc--- 256  Q
      ||||||||||||||| ||||||||||| ||||||||| |||||| ||||||| |||||||||||||| ||||| ||| | ||||||||| ||||        
T  9851452 cctcatatcttcaataacaaattcatctagcaaatcatctgcaggatgaagcacatctttgagccttcttacccaatttcgaacagcatgattttgtgct 9851551  T
Q  257 tcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaatt 356  Q
    ||||||||||||||||||| |||||||||| || | || |||||||| |||||||||||| |||||||||||| ||| |||||||| |||||||||||||    
T  9851552 tcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagcttttccaattcattcataacaccattgatccgtccaaatt 9851651  T
Q  357 cacgaaaggctgcaga 372  Q
    |||| ||||| |||||    
T  9851652 cacgcaaggcagcaga 9851667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 168 - 378
Target Start/End: Original strand, 2916491 - 2916701
Alignment:
Q  168 cttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctcttgtttctc 267  Q
    ||||||||| ||||||||||| ||| |||||||||||| ||||||| || ||||| ||||||| ||||||||||||||||||  |||| |||||||||||    
T  2916491 cttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctc 2916590  T
Q  268 ttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacgaaaggct 367  Q
     ||||||| ||||||||||||||||||||||||||| || | |  |||||| || |  |||| | | |||||||  ||||||| |||||||||| ||||     
T  2916591 ctcagcatcaaggagcacagctttgatggattcaaccgtctcccgaagcctatcgacctcatacttaacaccatatatccgtcgaaattcacgacaggcc 2916690  T
Q  368 gcagaagccaa 378  Q
     ||||||||||    
T  2916691 tcagaagccaa 2916701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 238 - 404
Target Start/End: Complemental strand, 2980111 - 2979945
Alignment:
Q  238 ttgtacagcatgactttgctcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcaca 337  Q
    ||||||||||||||||| |||||||||||| ||||||| |||||| |||||| |||||  ||||| |||||| ||||| ||||| |||||||||||||||    
T  2980111 ttgtacagcatgacttttctcttgtttctcctcagcatcaaggagtacagctctgatgacttcaattgtgtttttaagtctttctaattcatccatcaca 2980012  T
Q  338 ccattaatccgtccaaattcacgaaaggctgcagaagccaacctacgaaaacaaaattttcagcaaa 404  Q
      |||||||||||||||||| || |||||  |||||||||||||||| ||| ||||| |||||||||    
T  2980011 ttattaatccgtccaaattcgcgtaaggcaacagaagccaacctacgtaaagaaaatattcagcaaa 2979945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 154 - 381
Target Start/End: Original strand, 2911477 - 2911704
Alignment:
Q  154 tttgtgtatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactt 253  Q
    ||||||| ||| ||||||||||| ||||||||||| ||| |  ||||||  |   ||||| |||||||| ||||||| |||||||| |||||||||  ||    
T  2911477 tttgtgtctcaaatcttcaataacaaattcatctagcaagttgtcagcaaaattcagcacatctttgagtcttctaatccagttttttacagcatggttt 2911576  T
Q  254 tgctcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaa 353  Q
    || |||||||| || ||||||| |||||| |||  | |||| || |||||||| ||||||||||||||||| |||| ||| |||||||  || | |||||    
T  2911577 tgttcttgtttgtcctcagcatcaaggagtacatttctgatagactcaactgtattcttaagcctttccaactcattcataacaccatagattcctccaa 2911676  T
Q  354 attcacgaaaggctgcagaagccaacct 381  Q
    | ||||||||||| ||||| ||||||||    
T  2911677 actcacgaaaggccgcagatgccaacct 2911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 162 - 382
Target Start/End: Complemental strand, 13791045 - 13790825
Alignment:
Q  162 tcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctcttg 261  Q
    ||||| ||||||||| ||||||||||| ||| ||||| ||| || ||||||| ||| |||||||||| | ||| || |||||| ||  | |||| || ||    
T  13791045 tcataccttcaataataaattcatctagcaagtcatctgcaagatgaagcacatctgtgagccttcttatccaattctgtacaacaaaattttgttcctg 13790946  T
Q  262 tttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacga 361  Q
    ||| || |  || | |||||||||| || | | | ||||||| | ||||||||| |||||||| |||||||| ||||||  ||   |||||| |||||||    
T  13790945 tttatcctgggcgtcaaggagcacaactcttacgcattcaacagagttcttaagtctttccaactcatccataacaccaaaaacttgtccaagttcacga 13790846  T
Q  362 aaggctgcagaagccaaccta 382  Q
    |||||||| |||| |||||||    
T  13790845 aaggctgccgaagtcaaccta 13790825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 3282983 - 3283057
Alignment:
Q  308 ttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacgaaaggctgcagaagccaaccta 382  Q
    |||||||| ||||| || |||||||| ||||||  ||| ||||||  ||||||||||||||||||||||||||||    
T  3282983 ttcttaagtctttctaactcatccataacaccaaaaattcgtccatgttcacgaaaggctgcagaagccaaccta 3283057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 2978990 - 2978920
Alignment:
Q  484 gaaaatgaagtcacctattaatgaggcgtgtagcaacaccgtatgcaatatgtgcagtcatccttcaaaaa 554  Q
    |||||||||||||||| |||| ||| | ||||||||||| ||||| ||| ||| ||| |||||||||||||    
T  2978990 gaaaatgaagtcacctgttaacgagacttgtagcaacactgtatggaatttgttcagccatccttcaaaaa 2978920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 3282852 - 3282917
Alignment:
Q  162 tcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttc 227  Q
    ||||| |||||||||  |||||||||| ||| ||||| ||| || ||||||| |||||||||||||    
T  3282852 tcataccttcaataatgaattcatctagcaagtcatctgcaagatgaagcacatctttgagccttc 3282917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 2711491 - 2711519
Alignment:
Q  13 cacagacatatctttcacaacatcattaa 41  Q
    |||||||||||||||||||||||||||||    
T  2711491 cacagacatatctttcacaacatcattaa 2711519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 60 - 400
Target Start/End: Complemental strand, 18355598 - 18355258
Alignment:
Q  60 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 159  Q
    |||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  18355598 caatctcatgagccattttacggcgaaaagcagttctgcttggtgagaaggaatgaaatacctgtttcactttgttcttatgagctttatcccttttgtg 18355499  T
Q  160 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctct 259  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||    
T  18355498 tatcatatcttcaataaaaaattcatctatcaaatcatctgcaggaagaagcaggtcgttgagccttctaacccagagttgtacagcatgactttgctct 18355399  T
Q  260 tgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcac 359  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||| ||||||| |||||    
T  18355398 tgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtcttcttaagcctttccagttcatccatgacaccataaattcgtccaatttcac 18355299  T
Q  360 gaaaggctgcagaagccaacctacgaaaacaaaattttcag 400  Q
    ||||||||||||||||||||||| ||| | ||||| |||||    
T  18355298 gaaaggctgcagaagccaacctatgaagagaaaatattcag 18355258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 7e-88; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 60 - 404
Target Start/End: Original strand, 10755912 - 10756256
Alignment:
Q  60 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 159  Q
    |||||||  ||||||||||| | | |||| ||||| |||||| |||||| ||||||| ||||| ||| ||||||||||||| ||||| ||| |||||| |    
T  10755912 caatctctagagccattttacgacaaaaaacagctttgcttaaagagaaagaatgaagtacctttgttactttgttcttatgagcttcatcccttttgcg 10756011  T
Q  160 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctct 259  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||||||||| |||||||||||||||||  | |||||| ||||    
T  10756012 tatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctct 10756111  T
Q  260 tgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcac 359  Q
    ||||| |  ||||||| ||||||||||||| |||||||||||||||| ||| |||| ||||| ||||||||  |||||  ||||||||||||||||||||    
T  10756112 tgtttgttctcagcatcaaggagcacagctctgatggattcaactgtcttcgtaaggctttctaattcatctttcacattattaatccgtccaaattcac 10756211  T
Q  360 gaaaggctgcagaagccaacctacgaaaacaaaattttcagcaaa 404  Q
    | |||||  |||||||||||||| ||||| |||| | ||||||||    
T  10756212 gtaaggcaacagaagccaacctatgaaaagaaaaatgtcagcaaa 10756256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 60 - 381
Target Start/End: Original strand, 3919404 - 3919728
Alignment:
Q  60 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 159  Q
    |||||||||||||||||||| |||||||||||  |||| || |||| |||||||||| ||||| ||| |||||||||||||||||||  ||  |||||||    
T  3919404 caatctcatgagccattttacggcgaaaagcaaatctgtttggagataaggaatgaagtacctttgttactttgttcttatcagcttcctcaattttgtg 3919503  T
Q  160 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtc---tttgagccttctaacccagttttgtacagcatgactttgc 256  Q
    | ||||||| | ||||| ||||||||| | ||| |||||||||||| ||||||| ||   |||||||||||| | ||||||||| ||| ||||| ||||     
T  3919504 tctcatatcgtgaataacaaattcatcgagcaagtcatcagcaggatgaagcacatcatctttgagccttcttatccagttttgcacaccatgattttgt 3919603  T
Q  257 tcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaatt 356  Q
    | ||||||||| || |||| ||||||||||||| ||||||||| ||||||  |||||||||||||||| | || ||| ||||||| |||||| |||||||    
T  3919604 tgttgtttctcctcggcatcaaggagcacagctctgatggattgaactgtactcttaagcctttccaactgatgcataacaccataaatccgcccaaatt 3919703  T
Q  357 cacgaaaggctgcagaagccaacct 381  Q
    ||||||| |||||||||||||||||    
T  3919704 cacgaaacgctgcagaagccaacct 3919728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 60 - 402
Target Start/End: Complemental strand, 45317 - 44973
Alignment:
Q  60 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 159  Q
    |||||||||||||||||||| ||| |||||||  |||  || |||| |||  ||||| |||||||||||||||||||||   ||||| ||| | ||||||    
T  45317 caatctcatgagccattttacggctaaaagcaattctatttggagataagcgatgaagtacctgtgtcactttgttcttgcgagcttcatcccgtttgtg 45218  T
Q  160 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtc---tttgagccttctaacccagttttgtacagcatgactttgc 256  Q
    | |||| |||||||||  ||||||||||| |||||||||||||||| ||||||| ||   |||||| ||||| | ||||||||| ||| ||||||||||     
T  45217 tctcatgtcttcaatagaaaattcatctagcaaatcatcagcaggatgaagcacatcatctttgagtcttcttatccagttttgcacaccatgactttgt 45118  T
Q  257 tcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaatt 356  Q
    | ||||||||| ||||||| ||||||||||||| ||| ||||||||| || ||||||||||||||||| |||| ||| ||||||| |||||||||||| |    
T  45117 tgttgtttctcctcagcatcaaggagcacagctctgacggattcaacagtattcttaagcctttccaactcatgcataacaccatgaatccgtccaaact 45018  T
Q  357 cacgaaaggctgcagaagccaacctacgaaaacaaaattttcagca 402  Q
    || |||| ||||||||||||||||| | |||| ||||| |||||||    
T  45017 catgaaaagctgcagaagccaacctgc-aaaagaaaatattcagca 44973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 60 - 380
Target Start/End: Complemental strand, 50486 - 50163
Alignment:
Q  60 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 159  Q
    |||||||||||||||||||| |||||||||||  |||| || |||| || ||||||| ||||||| ||| ||| ||||||  ||||| ||||| ||||||    
T  50486 caatctcatgagccattttaaggcgaaaagcaattctgtttggagataaagaatgaagtacctgtctcagttttttcttacgagcttcatctcgtttgtg 50387  T
Q  160 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtc---tttgagccttctaacccagttttgtacagcatgactttgc 256  Q
    | ||| ||||||||||||||||| ||||| ||| |||||||||||| |||| || ||   |||||| ||||| | |||| |||||||||||| |||||||    
T  50386 tctcaaatcttcaataagaaatttatctagcaagtcatcagcaggatgaagtacatcatctttgagtcttcttatccagatttgtacagcattactttgc 50287  T
Q  257 tcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaatt 356  Q
    |||||||||||||||||||  ||||||||||||  || ||||||||| || ||||||||||||| ||| |  | ||| ||||||| ||||||||||||||    
T  50286 tcttgtttctcttcagcatcgaggagcacagctcagacggattcaacagtattcttaagccttttcaacttgtgcataacaccatgaatccgtccaaatt 50187  T
Q  357 cacgaaaggctgcagaagccaacc 380  Q
    ||||||| || |||||||||||||    
T  50186 cacgaaaagcagcagaagccaacc 50163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 176 - 404
Target Start/End: Complemental strand, 8572792 - 8572564
Alignment:
Q  176 agaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctcttgtttctcttcagcat 275  Q
    ||||||||||||||||||||||| |||| || |||||| |||||||||||| |||||||||||||||||  | |||||| ||||||||| |  |||||||    
T  8572792 agaaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcat 8572693  T
Q  276 aaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacgaaaggctgcagaagc 375  Q
     ||||||| ||||| |||||||||||||||| ||| |||| ||||| ||||||||  |||||  |||||||| |||||||||||| |||||  |||||||    
T  8572692 caaggagcgcagctctgatggattcaactgtcttcgtaagactttctaattcatctttcacattattaatccttccaaattcacgtaaggcaacagaagc 8572593  T
Q  376 caacctacgaaaacaaaattttcagcaaa 404  Q
    ||||||| ||||| |||| | ||||||||    
T  8572592 caacctatgaaaagaaaaatgtcagcaaa 8572564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 176 - 404
Target Start/End: Complemental strand, 28698752 - 28698524
Alignment:
Q  176 agaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctcttgtttctcttcagcat 275  Q
    ||||||||||||||||||||||| |||| || |||||| |||||||||||| |||||||||||||||||  | |||||| ||||||||| |  |||||||    
T  28698752 agaaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcat 28698653  T
Q  276 aaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacgaaaggctgcagaagc 375  Q
     ||||||| ||||| |||||||||||||||| ||| |||| ||||| ||||||||  |||||  |||||||| |||||||||||| |||||  |||||||    
T  28698652 caaggagcgcagctctgatggattcaactgtcttcgtaagactttctaattcatctttcacattattaatccttccaaattcacgtaaggcaacagaagc 28698553  T
Q  376 caacctacgaaaacaaaattttcagcaaa 404  Q
    ||||||| ||||| |||| | ||||||||    
T  28698552 caacctatgaaaagaaaaatgtcagcaaa 28698524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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