View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_23 (Length: 281)
Name: NF19161_low_23
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 21056547 - 21056323
Alignment:
| Q |
18 |
caaacaaatcctctactcaaattaggcaacagtagaaccaagatcaccccttccattcttgcttaaagtccagttcctgcaaaatttatttccacggatt |
117 |
Q |
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| T |
21056547 |
caaacaaatcctctactcaaattaggcaacagtagaaccaagatcaccccttccattcttgcttaaagtccagttcctgcaaaatttatttccacggatt |
21056448 |
T |
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| Q |
118 |
ctgcattttctatccctcaattttattatagtcaaagcagaattctccagataatttcaccaaatcaatagtgcacaatccttgtgcaacacatgagaat |
217 |
Q |
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| T |
21056447 |
ctgcattttctatccctcaattttattatagtcaaagcagaattctcgagataatttcaccaaatcaatagtgcacaatccttgtgaaccacatgagaat |
21056348 |
T |
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| Q |
218 |
ttgacttctatttcattattatata |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
21056347 |
ttgacttctatttcattattatata |
21056323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 26365431 - 26365585
Alignment:
| Q |
22 |
caaatcctctactcaaattaggcaacagtagaaccaagatcaccccttccattcttgcttaaagtccagttcctgcaaaatttatttccacggattctgc |
121 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||| || || |||||| |
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| T |
26365431 |
caaatcctctactcaaattaggcaacagttggaccaagatcactccttccattcttgcttaaagttcagttcctgcaaatttaat---------ttctgc |
26365521 |
T |
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| Q |
122 |
attttctatccc-tcaattttattatagtcaaagcagaattctccagataatttcaccaaatca |
184 |
Q |
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|||||||||||| | || ||||| || |||||||| |||| |||||||||| ||||||||||| |
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| T |
26365522 |
attttctatcccaactatcttattgtattcaaagcaaaattttccagataatatcaccaaatca |
26365585 |
T |
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