View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_24 (Length: 275)
Name: NF19161_low_24
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_24 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 88 - 275
Target Start/End: Complemental strand, 25526823 - 25526636
Alignment:
| Q |
88 |
atgttttttctcgcgagtcgagtcctaatagataaatcgaaacaaaaaggtatttttcgattgagtggtttttaagaatcatgacgtagaaaaataagac |
187 |
Q |
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| T |
25526823 |
atgttttttctcgcgagtcgagtcctaatagataaatcgaaacaaaaaggtatttttcgattgagtggtttttaagaatcatgacgtaggaaaataagac |
25526724 |
T |
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| Q |
188 |
gctttcatgtttcatgtttgttatgttaattgataagtatattcaacttaacgtaatgtgtcgttgcataggatgacattgttattag |
275 |
Q |
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| T |
25526723 |
gcttttatgtttcatgtttgttatgttaattgataagtatattcaacttaacgtaatgtgtcgttgcataggatgacattgttattag |
25526636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 25526854 - 25526812
Alignment:
| Q |
14 |
atatcaatggtgttatcaaacctggaaggtaatgttttttctc |
56 |
Q |
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| T |
25526854 |
atatcaatggtgttatcaaacctggaaggtaatgttttttctc |
25526812 |
T |
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