View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_29 (Length: 246)
Name: NF19161_low_29
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 872779 - 872998
Alignment:
| Q |
1 |
ttggagtctgcatgctacgatttacattttcagttaagtgggtatttatttatcgattgaataattaatatgcaccattttccttttttgcaatagtggt |
100 |
Q |
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| T |
872779 |
ttggagtctgcatgctacgatttacattttcagttaagtgggtatt----tatcgattgaataattaatatgcaccattttccttgtttgcaatagtggt |
872874 |
T |
|
| Q |
101 |
caatccaaataatatgaatcacacatattttcaatttctatacgaatcatgttattttacgagtaaattacattttaccgtaagcattaattgtgaaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
872875 |
caatccaaataatatgaatcacacatattttcaatttctatacgaatcatgttattttacgagtaaattacattttaccgtaagcattaattgtgaaagt |
872974 |
T |
|
| Q |
201 |
gtaatgctcaaatcctttgggtag |
224 |
Q |
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|
|||||||||||||||||||||||| |
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| T |
872975 |
gtaatgctcaaatcctttgggtag |
872998 |
T |
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