View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19161_low_3 (Length: 521)

Name: NF19161_low_3
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19161_low_3
NF19161_low_3
[»] chr2 (19 HSPs)
chr2 (132-393)||(1551486-1551747)
chr2 (132-392)||(1895383-1895643)
chr2 (136-384)||(17281841-17282090)
chr2 (140-392)||(17375258-17375510)
chr2 (132-264)||(3921565-3921697)
chr2 (132-224)||(34660259-34660351)
chr2 (132-224)||(4869618-4869710)
chr2 (9-60)||(1551819-1551870)
chr2 (9-60)||(1895260-1895311)
chr2 (273-323)||(3921683-3921733)
chr2 (11-60)||(17282166-17282215)
chr2 (470-521)||(1551359-1551410)
chr2 (11-60)||(3921444-3921493)
chr2 (13-59)||(17375153-17375199)
chr2 (11-58)||(4869507-4869554)
chr2 (12-59)||(14950840-14950887)
chr2 (277-342)||(4869707-4869772)
chr2 (470-509)||(17281726-17281765)
chr2 (470-512)||(1895712-1895754)
[»] chr6 (8 HSPs)
chr6 (132-392)||(20740551-20740811)
chr6 (145-392)||(21881453-21881700)
chr6 (9-60)||(20740453-20740504)
chr6 (11-59)||(21881318-21881366)
chr6 (470-521)||(20740889-20740940)
chr6 (162-225)||(30845560-30845623)
chr6 (12-59)||(32747721-32747768)
chr6 (132-176)||(34213506-34213550)
[»] chr4 (20 HSPs)
chr4 (135-392)||(53202242-53202499)
chr4 (140-392)||(47518340-47518592)
chr4 (132-386)||(23054129-23054382)
chr4 (134-242)||(34227057-34227165)
chr4 (173-331)||(6410005-6410164)
chr4 (11-60)||(53202118-53202167)
chr4 (11-60)||(47518672-47518721)
chr4 (156-221)||(12469342-12469407)
chr4 (470-517)||(53202568-53202615)
chr4 (6-60)||(23054455-23054508)
chr4 (173-221)||(12466698-12466746)
chr4 (15-58)||(12489216-12489259)
chr4 (252-315)||(24957572-24957635)
chr4 (9-60)||(34227214-34227265)
chr4 (12-59)||(45873102-45873149)
chr4 (12-59)||(14441115-14441162)
chr4 (471-516)||(23054010-23054056)
chr4 (14-59)||(12130516-12130561)
chr4 (255-308)||(12485360-12485413)
chr4 (173-213)||(12485474-12485514)
[»] chr5 (25 HSPs)
chr5 (132-392)||(7766894-7767154)
chr5 (132-392)||(18696906-18697168)
chr5 (132-386)||(27169983-27170238)
chr5 (174-261)||(41355543-41355630)
chr5 (132-224)||(6030388-6030480)
chr5 (273-392)||(41355435-41355554)
chr5 (145-222)||(38958230-38958307)
chr5 (132-217)||(7271807-7271892)
chr5 (278-392)||(7271893-7272004)
chr5 (11-60)||(38958393-38958442)
chr5 (15-60)||(41355732-41355777)
chr5 (277-342)||(6030326-6030391)
chr5 (11-58)||(7271708-7271755)
chr5 (470-517)||(18697228-18697275)
chr5 (12-59)||(26331222-26331269)
chr5 (174-224)||(26656780-26656830)
chr5 (174-224)||(26928367-26928417)
chr5 (12-50)||(42221388-42221426)
chr5 (277-342)||(26656827-26656892)
chr5 (277-342)||(26928414-26928479)
chr5 (15-59)||(40599996-40600040)
chr5 (12-59)||(24867210-24867257)
chr5 (11-58)||(26656630-26656676)
chr5 (11-58)||(26928217-26928263)
chr5 (16-59)||(27170286-27170329)
[»] chr8 (7 HSPs)
chr8 (132-388)||(5994603-5994859)
chr8 (132-392)||(10408798-10409058)
chr8 (140-337)||(6444016-6444214)
chr8 (12-59)||(5994485-5994532)
chr8 (11-60)||(10408702-10408751)
chr8 (12-59)||(15050167-15050214)
chr8 (15-59)||(3763045-3763089)
[»] chr1 (15 HSPs)
chr1 (178-392)||(34117991-34118207)
chr1 (273-392)||(34655069-34655188)
chr1 (174-337)||(11407928-11408092)
chr1 (139-264)||(34654958-34655083)
chr1 (140-262)||(26236671-26236793)
chr1 (174-264)||(39709015-39709105)
chr1 (274-384)||(39708919-39709028)
chr1 (11-60)||(34654830-34654879)
chr1 (138-224)||(615740-615826)
chr1 (277-342)||(615823-615888)
chr1 (11-59)||(39709195-39709243)
chr1 (9-59)||(34117896-34117946)
chr1 (172-225)||(32058689-32058742)
chr1 (15-59)||(11814695-11814739)
chr1 (481-517)||(39708651-39708687)
[»] chr7 (4 HSPs)
chr7 (132-369)||(3302548-3302785)
chr7 (11-60)||(11698564-11698613)
chr7 (11-59)||(3302427-3302475)
chr7 (12-59)||(31039000-31039047)
[»] chr3 (6 HSPs)
chr3 (132-224)||(18269763-18269855)
chr3 (132-225)||(43275952-43276045)
chr3 (11-59)||(43275830-43275879)
chr3 (6-58)||(18269919-18269971)
chr3 (15-59)||(31699221-31699265)
chr3 (481-517)||(18269622-18269658)
[»] scaffold0157 (3 HSPs)
scaffold0157 (15-58)||(31218-31261)
scaffold0157 (255-308)||(35064-35117)
scaffold0157 (173-213)||(34963-35003)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 132 - 393
Target Start/End: Complemental strand, 1551747 - 1551486
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1551747 gagccccgccactaaagacccaaaatcagcactaccaagaaaaccaccacgaagtaccacaaaccaacacaaccaaagatccatcgaaactatataagtt 1551648  T
Q  232 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 331  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1551647 cataagcgaacctatacatgatccatcaccaccatcgtgactgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaatagagaaa 1551548  T
Q  332 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgacat 393  Q
    ||||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||||    
T  1551547 acaaatcaaatagtctgagacccacgaaaatcaaacaattacaggcaagcatccaacgacat 1551486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 132 - 392
Target Start/End: Original strand, 1895383 - 1895643
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1895383 gagccccgccacaaaagacccaaaatcaataccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 1895482  T
Q  232 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 331  Q
    |||||||||||||| ||||||  ||||||||||||| |||| |||| |||||||||||||||| ||||| ||||||| |||||||||||||| |||||||    
T  1895483 cataagcgaacctagatatgactcatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaa 1895582  T
Q  332 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 392  Q
    | ||||||||| ||||||| ||||| |||||||||||| ||| | ||||||||||||||||    
T  1895583 agaaatcaaatagtctgagacccacaaaaaccaaacaaccaccgacaagcatccaacgaca 1895643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 136 - 384
Target Start/End: Complemental strand, 17282090 - 17281841
Alignment:
Q  136 cccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaa-ccaacacaaccaaagatccatcgaaaccatataagttcat 234  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17282090 cccgccacaaaagacccaaaatcagcaccaccaagaaaaccaccatgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcat 17281991  T
Q  235 aagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaaca 334  Q
    |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||    
T  17281990 aagcaaacctagatatgatccatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaaca 17281891  T
Q  335 aatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatc 384  Q
    |||||||| ||||||| || ||||||| ||||||| ||| || |||||||    
T  17281890 aatcaaatagtctgagacctacgaaaaacaaacaaccaccggaaagcatc 17281841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 140 - 392
Target Start/End: Original strand, 17375258 - 17375510
Alignment:
Q  140 ccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcg 239  Q
    |||| ||||||| |||||||| ||||||| ||||||   ||||||| ||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  17375258 ccacaaaagacctaaaatcagcaccaccatgaaaactgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcg 17375357  T
Q  240 aacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatca 339  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||    
T  17375358 aacctagatatgatccatcaccaccatcgtgatcgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaatagagaaaacgaatca 17375457  T
Q  340 aattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 392  Q
    ||| || ||||  ||||||||||||||||| ||| | || |||||||||||||    
T  17375458 aatagtgtgagagccacgaaaaccaaacaaccaccgacaggcatccaacgaca 17375510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 132 - 264
Target Start/End: Original strand, 3921565 - 3921697
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    |||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  3921565 gagccccgccacaaatgacccaaaatcagcaccaccaagaaaaccaccgtgaagtaccacaaaccaacacaaccaaacatccatcaaaaccatataagtt 3921664  T
Q  232 cataagcgaacctatatatgatccatcaccacc 264  Q
    ||||||||||| || ||||||||||||||||||    
T  3921665 cataagcgaacttagatatgatccatcaccacc 3921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 34660259 - 34660351
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 224  Q
    ||||| |||||| ||| |||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  34660259 gagcctcgccacaaaacacccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 4869618 - 4869710
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 224  Q
    |||||||||||| |||||||||||||||| |||| || ||||||| |||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  4869618 gagccccgccacaaaagacccaaaatcagcaccatcatgaaaaccgccatgaagcaccgcaaaccaaaacaaccaaagatccatcaaaaccat 4869710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 1551870 - 1551819
Alignment:
Q  9 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1551870 catcaccaaaactaccattgaccacctcaaaaatcaccattaaccctcacct 1551819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 1895260 - 1895311
Alignment:
Q  9 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1895260 catcaccaaaactaccattgaacaccacaaaaatcaccattaaccctcacct 1895311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 3921683 - 3921733
Alignment:
Q  273 tgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaa 323  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3921683 tgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaa 3921733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 17282215 - 17282166
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17282215 tcaccaaacctaccattgaccaccacaaaaatcaccattaaccctcacct 17282166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 470 - 521
Target Start/End: Complemental strand, 1551410 - 1551359
Alignment:
Q  470 tttacgacgacagagaacaaccgcacgtcggaaaggtacggtggtgcgaagg 521  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  1551410 tttacgacgacggagagcaaccgcacgtcggaaaggtacggtggtgcgaagg 1551359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 3921444 - 3921493
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  3921444 tcaccaaaactactatttaccaccacaaaaatcaccattaaccctcacct 3921493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 17375153 - 17375199
Alignment:
Q  13 accaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  17375153 accaaaactaccattgaccaccacaaaaaccacaattaaccctcacc 17375199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 4869507 - 4869554
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcac 58  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  4869507 tcacaaaaactaccattgaccaccacaaaaaccaccattaaccatcac 4869554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 14950887 - 14950840
Alignment:
Q  12 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  14950887 caccaaaactaccattaaccaccacaaaaaccaccattaatcctcacc 14950840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 4869707 - 4869772
Alignment:
Q  277 ccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaat 342  Q
    ||||||||||||||||||  | ||||| |||| |||||| ||||||| ||||||||| ||||||||    
T  4869707 ccatcaccacctatgttgctatcaaacgtaacctccaccgcaaccaagagagaaaacgaatcaaat 4869772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 509
Target Start/End: Complemental strand, 17281765 - 17281726
Alignment:
Q  470 tttacgacgacagagaacaaccgcacgtcggaaaggtacg 509  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  17281765 tttacgacgacatagagcaaccgcacgtcggaaaggtacg 17281726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 1895712 - 1895754
Alignment:
Q  470 tttacgacgacagagaacaaccgcacgtcggaaaggtacggtg 512  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  1895712 tttacgacgatagagagcaaccgcacgtcggaaaggtatggtg 1895754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 132 - 392
Target Start/End: Original strand, 20740551 - 20740811
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20740551 gagccccgccactaaagacccaaaatcagcaccaccaagaaaaccaccatgaagtaccataaaccaacacaaccaaagatccatcgaaaccatataagtt 20740650  T
Q  232 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 331  Q
    ||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  20740651 cataaccgaacctagatatgatccatcaccaccatcgtgaccaatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagagagaaa 20740750  T
Q  332 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 392  Q
    ||||||||||| || |||| ||||||||||||||||||| ||| |||||||||||||||||    
T  20740751 acaaatcaaatagtttgagacccacgaaaaccaaacaataacatgcaagcatccaacgaca 20740811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 145 - 392
Target Start/End: Original strand, 21881453 - 21881700
Alignment:
Q  145 aaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacct 244  Q
    |||||||||||||||| ||||||| || |||  |||||||| |||||||||||||| |||||||||| |||||||||||||  |||||||||||||||||    
T  21881453 aaagacccaaaatcagcaccaccatgataactgccatgaagcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacct 21881552  T
Q  245 atatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaattg 344  Q
    | |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||| ||||| |||| ||||||||| |||||||| |    
T  21881553 agatatgatccatcaccaccatcgtgaccgatccatcaccacctttgttgcgagcaaacataacctccgccacagccaagagagaaaacgaatcaaatag 21881652  T
Q  345 tctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 392  Q
    ||||||  |||||||||||||||||  || | ||||||||||||||||    
T  21881653 tctgagagccacgaaaaccaaacaacgaccgacaagcatccaacgaca 21881700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 20740453 - 20740504
Alignment:
Q  9 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20740453 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccttcacct 20740504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 21881318 - 21881366
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  21881318 tcaccaaaactagcattgaccaccacaaaaatcacgattaaccctcacc 21881366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 521
Target Start/End: Original strand, 20740889 - 20740940
Alignment:
Q  470 tttacgacgacagagaacaaccgcacgtcggaaaggtacggtggtgcgaagg 521  Q
    ||||||| |||||||| |||||||  ||||||||||||||||||||||||||    
T  20740889 tttacgatgacagagagcaaccgcctgtcggaaaggtacggtggtgcgaagg 20740940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 30845560 - 30845623
Alignment:
Q  162 accaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccata 225  Q
    ||||||| | ||||||||| |||| |||| ||||||||||||||||| || |||| ||||||||    
T  30845560 accaccatggaaaccaccacgaagcaccataaaccaacacaaccaaaaattcatcaaaaccata 30845623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 32747768 - 32747721
Alignment:
Q  12 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||||||| ||||||||||||| ||||||||  |||||||    
T  32747768 caccaaaactaccattaaccaccacaaaaaccaccattacacctcacc 32747721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 34213550 - 34213506
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaacc 176  Q
    |||||||||||| |||||||||||||||  ||||||| |||||||    
T  34213550 gagccccgccacaaaagacccaaaatcaacaccaccatgaaaacc 34213506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 135 - 392
Target Start/End: Original strand, 53202242 - 53202499
Alignment:
Q  135 ccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcat 234  Q
    ||||||||| |||||||||||||||  |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53202242 ccccgccacaaaagacccaaaatcaacaccaccaagaaaaccatcatgaagtaccacaaaccaatacaaccaaagatccatcgaaaccatataagttcat 53202341  T
Q  235 aagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaaca 334  Q
    ||||||| ||| ||||||| |||||||||||||||||| ||||  ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  53202342 aagcgaatctagatatgattcatcaccaccatcgtgaccgatctgtcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaaca 53202441  T
Q  335 aatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 392  Q
    |||||||| || |||| |||||||||||||||||| ||||| ||||||||||||||||    
T  53202442 aatcaaatagtttgagacccacgaaaaccaaacaaccacagacaagcatccaacgaca 53202499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 140 - 392
Target Start/End: Complemental strand, 47518592 - 47518340
Alignment:
Q  140 ccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcg 239  Q
    |||| ||||| |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47518592 ccacaaaagatccaaaatcagcaacaccaagaaaaccaccatgaagtaccacaaacgaacacaaccaaagatccatcgaaaccatataagttcataagcg 47518493  T
Q  240 aacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatca 339  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||  | |||||||||||||||    
T  47518492 aacctagatatgattcatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaacatagagagaaaacaaatca 47518393  T
Q  340 aattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 392  Q
    ||| ||||||| |||| ||||||||||||| ||| | ||||||||||||||||    
T  47518392 aatagtctgagacccatgaaaaccaaacaaccaccgacaagcatccaacgaca 47518340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 132 - 386
Target Start/End: Complemental strand, 23054382 - 23054129
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    |||| ||||||| |||||||||||||||| ||||||| ||||||| |||| ||| ||||| ||||||||||||||||||||||| |||||||||  ||||    
T  23054382 gagctccgccacaaaagacccaaaatcagcaccaccatgaaaaccgccataaagcaccacgaaccaacacaaccaaagatccattgaaaccataacagtt 23054283  T
Q  232 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 331  Q
    |||||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  23054282 cataagcgaaccgagatatgatccagcac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaa 23054184  T
Q  332 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatcca 386  Q
    ||||||||||| |||| || |||||||||||||||||| ||| | ||||||||||    
T  23054183 acaaatcaaatagtctcagacccacgaaaaccaaacaaccactgacaagcatcca 23054129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 34227165 - 34227057
Alignment:
Q  134 gccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttca 233  Q
    ||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  34227165 gccccaccacaaaagacccaaaatcagcaccaccaagaaagccaccatgaagtaccacagaccaacacaaccaaagatccattgaaaccatataagttca 34227066  T
Q  234 taagcgaac 242  Q
    |||||||||    
T  34227065 taagcgaac 34227057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 173 - 331
Target Start/End: Original strand, 6410005 - 6410164
Alignment:
Q  173 aaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctatatatgatccatcaccaccatcgtgac 272  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||  || ||||||||||||  | || ||||| ||| ||||| |||||||    
T  6410005 aaccaccatgaagcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgac 6410104  T
Q  273 tgatccatcaccacctatgttgggagcaaacataacatcca-ccacaaccaatagagaaa 331  Q
     ||||||||||||||||| ||| ||||||||||||| |||| |||| ||||| |||||||    
T  6410105 cgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 6410164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 53202118 - 53202167
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202118 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 53202167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 47518721 - 47518672
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47518721 tcaccaaaactaccattgaccaccacaaaaatcactattaaccctcacct 47518672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 12469407 - 12469342
Alignment:
Q  156 atcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaac 221  Q
    ||||| ||||||| |  ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  12469407 atcagcaccaccatggtaaccaccatgaaggaccacaaaccaacacaaccaaggatccatcgaaac 12469342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 517
Target Start/End: Original strand, 53202568 - 53202615
Alignment:
Q  470 tttacgacgacagagaacaaccgcacgtcggaaaggtacggtggtgcg 517  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  53202568 tttacgacgatagagagcaaccgcacgtcggaaaggtacggtggtgcg 53202615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 23054508 - 23054455
Alignment:
Q  6 catcatcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  23054508 catcgtcaccaaaactaccattgaccaccac-aaaaccaccattaaccctcacct 23054455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 12466746 - 12466698
Alignment:
Q  173 aaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaac 221  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  12466746 aaccaccatgaaggaccacaaaccaacataaccaaggatccatcgaaac 12466698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 12489259 - 12489216
Alignment:
Q  15 caaaactaccattgaccaccacaaaaatcaccattaaccctcac 58  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  12489259 caaaactaccattaaccaccacaaaaatcaccattaaccatcac 12489216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 24957635 - 24957572
Alignment:
Q  252 atccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccacc 315  Q
    |||||||  |||| ||||||| ||| ||||||||||||||||| ||||||||||||| ||||||    
T  24957635 atccatcgtcaccttcgtgaccgatacatcaccacctatgttgcgagcaaacataacctccacc 24957572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 34227265 - 34227214
Alignment:
Q  9 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||||||||||    
T  34227265 catcactaaaactaccattgaccatcacgaaaaccaccattaaccctcacct 34227214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 45873102 - 45873149
Alignment:
Q  12 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  45873102 caccaaaactaccattaaccaccacaaaaaccaccattaatcctcacc 45873149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 14441115 - 14441162
Alignment:
Q  12 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||||||| |||| |||||||| ||||||||| |||||||    
T  14441115 caccaaaactaccattaaccagcacaaaaaccaccattaatcctcacc 14441162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 23054056 - 23054010
Alignment:
Q  471 ttacgacgacagaga-acaaccgcacgtcggaaaggtacggtggtgc 516  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||    
T  23054056 ttacgacgacagagagagaaccgcacgtcggaaagatacggtggtgc 23054010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 12130516 - 12130561
Alignment:
Q  14 ccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    ||||||||||||||||||||||||||||  | |||||| |||||||    
T  12130516 ccaaaactaccattgaccaccacaaaaactatcattaatcctcacc 12130561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 12485413 - 12485360
Alignment:
Q  255 catcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataac 308  Q
    |||||||||||||||||||| |||||||||||  | |||| ||| |||||||||    
T  12485413 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataac 12485360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 12485514 - 12485474
Alignment:
Q  173 aaccaccatgaagtaccacaaaccaacacaaccaaagatcc 213  Q
    ||||||||||||| |||||||||||||||| |||| |||||    
T  12485514 aaccaccatgaagcaccacaaaccaacacatccaaggatcc 12485474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 5e-88; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 132 - 392
Target Start/End: Complemental strand, 7767154 - 7766894
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    |||||||||||| |||||||||||||||  ||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||  | ||    
T  7767154 gagccccgccacaaaagacccaaaatcaacaccaccatgaaacccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacaatt 7767055  T
Q  232 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 331  Q
    |||||| ||||||| |||||||||||||||||||| ||| | |||| |||||||||||||||| ||||||||||||| |||| ||||||||| |||||||    
T  7767054 cataagtgaacctagatatgatccatcaccaccattgtggccgatcaatcaccacctatgttgcgagcaaacataacctccatcacaaccaagagagaaa 7766955  T
Q  332 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 392  Q
    ||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  7766954 acaaatcaaatagtctgagacccacgaaaaccaaacaaccaccggcaagcatccaacgaca 7766894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 132 - 392
Target Start/End: Original strand, 18696906 - 18697168
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    |||||||| ||| ||||| |||||||||| | ||||| ||||| | |||||||| |||||||||||||||||||||||||||| |||| |||||  ||||    
T  18696906 gagccccgtcacaaaagatccaaaatcagcaacaccatgaaaaacgccatgaagcaccacaaaccaacacaaccaaagatccaccgaacccataacagtt 18697005  T
Q  232 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccac--cacaaccaatagaga 329  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||  ||||||||||| | |    
T  18697006 cataagcgaacctagatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgcgggcaaacataacctccaccacacaaccaatataaa 18697105  T
Q  330 aaacaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 392  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||| | |||  |||||||||||    
T  18697106 aaacaaatcaaatagtctgagacccacgaaaaccaaacaaccaccgacaattatccaacgaca 18697168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 132 - 386
Target Start/End: Complemental strand, 27170238 - 27169983
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    |||||||||||| ||||||||||||| || ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  27170238 gagccccgccacaaaagacccaaaattagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacagtt 27170139  T
Q  232 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagag-aa 330  Q
    | ||||  || | | ||||||||||| |||||||||||||| ||||||||||||| || |||| ||||||||||||| |||||||||||||| |||| ||    
T  27170138 cgtaagtaaagccaaatatgatccattaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaa 27170039  T
Q  331 aacaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatcca 386  Q
    ||| |||||||| | ||||| |||||||||||||||||| ||  || |||||||||    
T  27170038 aacgaatcaaatagcctgagacccacgaaaaccaaacaaccatcggaaagcatcca 27169983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 41355630 - 41355543
Alignment:
Q  174 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctatatatgatccatcacc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||    
T  41355630 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatccatcacc 41355543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 6030480 - 6030388
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 224  Q
    |||||||||||| |||||||||||||||| ||||||| |||||||  || |||| ||||||||||||||||||||||||||||||||||||||    
T  6030480 gagccccgccacaaaagacccaaaatcagcaccaccatgaaaaccgtcaggaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 273 - 392
Target Start/End: Complemental strand, 41355554 - 41355435
Alignment:
Q  273 tgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaattgtctgaggcccacgaaaaccaaacaatca 372  Q
    |||||||||||| ||||||||| ||||||| ||||| |||||||||||||| |||||||||||||||||| | || ||  ||||| |||| |||||| ||    
T  41355554 tgatccatcaccgcctatgttgcgagcaaatataacctccaccacaaccaagagagaaaacaaatcaaatagcctaagatccacggaaactaaacaacca 41355455  T
Q  373 caggcaagcatccaacgaca 392  Q
    | ||||||||||||||||||    
T  41355454 ccggcaagcatccaacgaca 41355435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 38958307 - 38958230
Alignment:
Q  145 aaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaacc 222  Q
    |||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38958307 aaagacccaaaatcagcaccatcaaaaaaaccaccatgaagtatcacaaaccaacacaaccaaagatccatcgaaacc 38958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 7271807 - 7271892
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcg 217  Q
    ||||| |||||| ||| |||||||||||| ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  7271807 gagcctcgccacaaaacacccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcg 7271892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 392
Target Start/End: Original strand, 7271893 - 7272004
Alignment:
Q  278 catcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggc 377  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||| ||   || ||||  |||||||||||| ||| | |    
T  7271893 catcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt---agccccaataaaaccaaacaaccactgac 7271989  T
Q  378 aagcatccaacgaca 392  Q
    |||||||||||||||    
T  7271990 aagcatccaacgaca 7272004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 38958442 - 38958393
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38958442 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 38958393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 41355777 - 41355732
Alignment:
Q  15 caaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41355777 caaaactaccattgaccaccacaaaaatcaccattaaccctcacct 41355732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 6030391 - 6030326
Alignment:
Q  277 ccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaat 342  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||| ||||||||| ||||||||    
T  6030391 ccatcaccacctatgttccgatcaaacataacatccaccgcaaccaagagagaaaacgaatcaaat 6030326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 7271708 - 7271755
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcac 58  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  7271708 tcaccaaaagtaccattgaccaccacaaaaaccaccattaaccatcac 7271755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 517
Target Start/End: Original strand, 18697228 - 18697275
Alignment:
Q  470 tttacgacgacagagaacaaccgcacgtcggaaaggtacggtggtgcg 517  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  18697228 tttacgacgacaaagagcaaccgcacgtcggaaatgtacggtggtgcg 18697275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 26331269 - 26331222
Alignment:
Q  12 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  26331269 caccaaaactaccattaaccaccacaaaaaccaccattaatcctcacc 26331222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 26656780 - 26656830
Alignment:
Q  174 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 224  Q
    |||||||||||| |||| ||||||| |||||||||||||| ||||||||||    
T  26656780 accaccatgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26656830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 26928367 - 26928417
Alignment:
Q  174 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 224  Q
    |||||||||||| |||| ||||||| |||||||||||||| ||||||||||    
T  26928367 accaccatgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26928417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 42221388 - 42221426
Alignment:
Q  12 caccaaaactaccattgaccaccacaaaaatcaccatta 50  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  42221388 caccaaaactaccattaaccaccacaaaaatcaccatta 42221426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 26656827 - 26656892
Alignment:
Q  277 ccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaat 342  Q
    |||||||||| ||| ||| ||||||||||||| | ||| |||||||| ||||||||| ||||||||    
T  26656827 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaat 26656892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 26928414 - 26928479
Alignment:
Q  277 ccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaat 342  Q
    |||||||||| ||| ||| ||||||||||||| | ||| |||||||| ||||||||| ||||||||    
T  26928414 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaat 26928479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 40600040 - 40599996
Alignment:
Q  15 caaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||||    
T  40600040 caaaactaccattaaccaccacaaaaaccaccattaatcctcacc 40599996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 24867257 - 24867210
Alignment:
Q  12 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||||||| |||| |||||||| ||||||||| |||||||    
T  24867257 caccaaaactaccattaaccaacacaaaaaccaccattaatcctcacc 24867210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 26656630 - 26656676
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcac 58  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  26656630 tcaccaaaactaccattgaccaccac-aaaaccaccattaaccatcac 26656676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 26928217 - 26928263
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcac 58  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  26928217 tcaccaaaactaccattgaccaccac-aaaaccaccattaaccatcac 26928263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 27170329 - 27170286
Alignment:
Q  16 aaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||    
T  27170329 aaaactaccattaaccaccacaaaaaccaccattaatcctcacc 27170286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 132 - 388
Target Start/End: Original strand, 5994603 - 5994859
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    |||||||||||| |||||||||||||||  | ||||| ||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||  ||||    
T  5994603 gagccccgccacaaaagacccaaaatcaacatcaccatgaataccgccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagtt 5994702  T
Q  232 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatcca-ccacaaccaatagagaa 330  Q
    |||||||||||| | ||||||||||||||||||||| |||  ||||||| | || |||||||| |||||||||||||||||| |||||||||| ||||||    
T  5994703 cataagcgaacccagatatgatccatcaccaccatcatgatcgatccattagca-ctatgttgcgagcaaacataacatccatccacaaccaagagagaa 5994801  T
Q  331 aacaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaac 388  Q
    |||||||||||  || ||||||||||||||||||||||||||| ||||| ||||||||    
T  5994802 aacaaatcaaacagtttgaggcccacgaaaaccaaacaatcaccggcaaccatccaac 5994859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 132 - 392
Target Start/End: Original strand, 10408798 - 10409058
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    |||||||||||| ||||| ||||||| || |||||||  |||||| |||||||| ||||||||||||||||||||||||| |||||||||||||  |  |    
T  10408798 gagccccgccacaaaagatccaaaattagcaccaccattaaaacctccatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacatat 10408897  T
Q  232 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 331  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |    
T  10408898 cataagcgaacctagatatgatccatcaccaccatcgtgaccgttccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaga 10408997  T
Q  332 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 392  Q
    | ||||||||| || |||| ||||| ||||||||| || |||   ||||||||||||||||    
T  10408998 aaaaatcaaatagtttgagacccacaaaaaccaaataaccaccaacaagcatccaacgaca 10409058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 140 - 337
Target Start/End: Original strand, 6444016 - 6444214
Alignment:
Q  140 ccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcg 239  Q
    |||| ||||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||| ||||||| | |||||||||||  || ||||| |||    
T  6444016 ccacaaaagacccaaaatcagccccaccatgaaaaccaccacgaagtaccacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcg 6444115  T
Q  240 aacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatcca-ccacaaccaatagagaaaacaaat 337  Q
    |||  |||| ||||||||||||||| | |||||  |||||| |||||||| |||| ||||||||||||| |||| |||||||||| ||||||| |||||    
T  6444116 aactcatatctgatccatcaccacctttgtgaccaatccataaccacctaagttgcgagcaaacataacctccatccacaaccaagagagaaatcaaat 6444214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 5994485 - 5994532
Alignment:
Q  12 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  5994485 caccaaaactaccattaaccaccacaaaaatcaccattaaccctcacc 5994532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 10408702 - 10408751
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    |||| ||||| |||||||||||||||||||| |||||||||| |||||||    
T  10408702 tcactaaaacaaccattgaccaccacaaaaaccaccattaactctcacct 10408751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 15050214 - 15050167
Alignment:
Q  12 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||||||| ||||||||||||| || |||||| |||||||    
T  15050214 caccaaaactaccattaaccaccacaaaaaccatcattaatcctcacc 15050167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 3763089 - 3763045
Alignment:
Q  15 caaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    ||||||||||||| ||||||||||||| || |||||| |||||||    
T  3763089 caaaactaccattaaccaccacaaaaaccatcattaatcctcacc 3763045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 178 - 392
Target Start/End: Original strand, 34117991 - 34118207
Alignment:
Q  178 ccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctatatatgatccatcaccaccatcgtgactgatc 277  Q
    |||||| | |||||||| |||||||||||||||||||  |||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  34117991 ccatgaggcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatc 34118090  T
Q  278 catcaccacctatgttgggagcaaacataacatccac--cacaaccaatagagaaaacaaatcaaattgtctgaggcccacgaaaaccaaacaatcacag 375  Q
    ||||||||||||||||| ||||||||||||| || ||  ||||||||||||||||||||||||||||  ||||||  |||||||||| |||||| ||| |    
T  34118091 catcaccacctatgttgcgagcaaacataacctctaccacacaaccaatagagaaaacaaatcaaataatctgagatccacgaaaactaaacaaccaccg 34118190  T
Q  376 gcaagcatccaacgaca 392  Q
    |||||||||||||||||    
T  34118191 gcaagcatccaacgaca 34118207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 273 - 392
Target Start/End: Original strand, 34655069 - 34655188
Alignment:
Q  273 tgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaattgtctgaggcccacgaaaaccaaacaatca 372  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||    
T  34655069 tgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaaaagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaaca 34655168  T
Q  373 caggcaagcatccaacgaca 392  Q
    | || |||||||||||||||    
T  34655169 ccggaaagcatccaacgaca 34655188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 174 - 337
Target Start/End: Complemental strand, 11408092 - 11407928
Alignment:
Q  174 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctatatatgatccatcaccaccatcgtgact 273  Q
    |||||||||||| |||||||||||||||||||||||||   |||||||||||  |  |||||||| |||| |||| ||||||||||||||| ||||| |     
T  11408092 accaccatgaagcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggcc 11407993  T
Q  274 gatccatcaccacctatgttgggagcaaacataacatcca-ccacaaccaatagagaaaacaaat 337  Q
    ||||||||||||| ||||||| ||||||||||||| |||| |||| ||||| |||||||||||||    
T  11407992 gatccatcaccacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaacaaat 11407928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 139 - 264
Target Start/End: Original strand, 34654958 - 34655083
Alignment:
Q  139 gccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagc 238  Q
    ||||| ||||| |||||||||| ||||||| ||||||| |||||||| ||||||||||||||||| ||||||| |||| ||||||||  | |||||||||    
T  34654958 gccaccaaagatccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagc 34655057  T
Q  239 gaacctatatatgatccatcaccacc 264  Q
    ||||||| ||||||||||||||||||    
T  34655058 gaacctagatatgatccatcaccacc 34655083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 26236793 - 26236671
Alignment:
Q  140 ccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcg 239  Q
    |||| |||||| ||||||||| |||| || |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||  || ||||||| |    
T  26236793 ccacaaaagactcaaaatcagcaccatcatgaaaaccaccatgaagcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtg 26236694  T
Q  240 aacctatatatgatccatcacca 262  Q
    |||| | || |||||||||||||    
T  26236693 aacccagatctgatccatcacca 26236671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 39709105 - 39709015
Alignment:
Q  174 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctatatatgatccatcaccacc 264  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||  ||||| |||||||||| | ||| ||||||||||||||    
T  39709105 accaccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacc 39709015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 384
Target Start/End: Complemental strand, 39709028 - 39708919
Alignment:
Q  274 gatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaattgtctgaggcccacgaaaaccaaacaatcac 373  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||| |||||||| ||  ||| |||| ||||||||||||| |||    
T  39709028 gatccatcaccacctatattgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccac 39708930  T
Q  374 aggcaagcatc 384  Q
     | ||||||||    
T  39708929 cgacaagcatc 39708919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 34654830 - 34654879
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654830 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 34654879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 615740 - 615826
Alignment:
Q  138 cgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 224  Q
    |||||| ||||| ||||| |||| ||||||| |||||||  ||||||| ||||||||| |||||||||||||||||||| |||||||    
T  615740 cgccacaaaagagccaaattcagcaccaccatgaaaaccgtcatgaagcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 615823 - 615888
Alignment:
Q  277 ccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaat 342  Q
    |||||||||||||||||| || |||||||||  |||||||||||||| ||||||||| ||||||||    
T  615823 ccatcaccacctatgttgcgatcaaacataatctccaccacaaccaagagagaaaacgaatcaaat 615888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 39709243 - 39709195
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  39709243 tcacgaaaactaccattaaccaccacaaaaatcaccattaaccctcacc 39709195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 34117896 - 34117946
Alignment:
Q  9 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  34117896 catcaccaaaactaccattgaccgctacaaaaaccaccattaaccctcacc 34117946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 32058689 - 32058742
Alignment:
Q  172 aaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccata 225  Q
    ||||||||| |||| |||| ||||||||||| ||||| ||||||| ||||||||    
T  32058689 aaaccaccacgaagcaccataaaccaacacagccaaaaatccatctaaaccata 32058742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 11814695 - 11814739
Alignment:
Q  15 caaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    ||||||||||||| |||| |||||||| ||||||||| |||||||    
T  11814695 caaaactaccattaaccatcacaaaaaccaccattaatcctcacc 11814739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 481 - 517
Target Start/End: Complemental strand, 39708687 - 39708651
Alignment:
Q  481 agagaacaaccgcacgtcggaaaggtacggtggtgcg 517  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  39708687 agagagcaaccgtacgtcggaaaggtacggtggtgcg 39708651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 132 - 369
Target Start/End: Original strand, 3302548 - 3302785
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 231  Q
    |||||||||||| |||||||||||||||  ||||||| ||||||   ||||||| |||||| ||||| |||||||||||||||||||||| |||  ||||    
T  3302548 gagccccgccacaaaagacccaaaatcaacaccaccatgaaaactgtcatgaagcaccacataccaatacaaccaaagatccatcgaaactataacagtt 3302647  T
Q  232 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 331  Q
     ||||||||| ||| |||||||  ||||||||||||||||  |||| |||||||||||||||| ||||||||||||| |||||||||||||| |||| ||    
T  3302648 aataagcgaatctagatatgatgtatcaccaccatcgtgatcgatctatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagaggaa 3302747  T
Q  332 acaaatcaaattgtctgaggcccacgaaaaccaaacaa 369  Q
    |  |||||||| |||||||  |||||||||||||||||    
T  3302748 atgaatcaaatagtctgagatccacgaaaaccaaacaa 3302785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 11698613 - 11698564
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698613 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacct 11698564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 3302427 - 3302475
Alignment:
Q  11 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  3302427 tcaccaaaactaccattgaccaccacaaaaaccaccattaacactcacc 3302475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 31039000 - 31039047
Alignment:
Q  12 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    |||||||||||||||| ||||||||||||| ||||||||  |||||||    
T  31039000 caccaaaactaccattaaccaccacaaaaaccaccattactcctcacc 31039047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 18269855 - 18269763
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 224  Q
    ||||||| |||| |||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18269855 gagccccaccacaaaagacccaaaatcaacaccaccatgaaaaccaccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 43275952 - 43276045
Alignment:
Q  132 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccata 225  Q
    |||| ||||||| |||||||||||||||| |||||||  ||||    ||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  43275952 gagctccgccacaaaagacccaaaatcagcaccaccataaaaattgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaatcata 43276045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 43275830 - 43275879
Alignment:
Q  11 tcaccaaaactaccattgaccaccac-aaaaatcaccattaaccctcacc 59  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  43275830 tcaccaaaactaccattgaccaccacaaaaaaccaccattaaccctcacc 43275879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 18269971 - 18269919
Alignment:
Q  6 catcatcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcac 58  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269971 catcgtcaccaaaacttccattgaccaccacaaaaaccaccattaaccatcac 18269919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 31699221 - 31699265
Alignment:
Q  15 caaaactaccattgaccaccacaaaaatcaccattaaccctcacc 59  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||||    
T  31699221 caaaactaccattaaccaccacaaaaaccaccattaatcctcacc 31699265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 481 - 517
Target Start/End: Complemental strand, 18269658 - 18269622
Alignment:
Q  481 agagaacaaccgcacgtcggaaaggtacggtggtgcg 517  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  18269658 agagagcaaccgtacgtcggaaaggtacggtggtgcg 18269622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 31218 - 31261
Alignment:
Q  15 caaaactaccattgaccaccacaaaaatcaccattaaccctcac 58  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  31218 caaaactaccattaaccaccacaaaaatcaccattaaccatcac 31261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 35064 - 35117
Alignment:
Q  255 catcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataac 308  Q
    |||||||||||||||||||| |||||||||||  | |||| ||| |||||||||    
T  35064 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataac 35117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 34963 - 35003
Alignment:
Q  173 aaccaccatgaagtaccacaaaccaacacaaccaaagatcc 213  Q
    ||||||||||||| |||||||||||||||| |||| |||||    
T  34963 aaccaccatgaagcaccacaaaccaacacatccaaggatcc 35003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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