View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_33 (Length: 218)
Name: NF19161_low_33
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 4551553 - 4551753
Alignment:
| Q |
1 |
aaaaagattttagtctagattataaaactagagtatttaatttagatggtgttttattatcttcataactgatagaaggaacaaccaatagcaacaaaca |
100 |
Q |
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| T |
4551553 |
aaaaagattttagtctagattataaaactagagtatttaatttagatggtgttttattatcttcataactgatagaaggaacaaccaatagcaacaaaca |
4551652 |
T |
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| Q |
101 |
tgtaaacaaaagaaaaaagtgaatcataaattatcttccatacatacctgaatttggagcaaaagtaagctggtagaacataaaatcatcatactttatc |
200 |
Q |
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| T |
4551653 |
tgtaaacaaaagaaaaaagtgaatcataaattatcttccatacatacctgaatttggagcaaaagtaagctggtagaacataaaatcatcatactttatc |
4551752 |
T |
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| Q |
201 |
a |
201 |
Q |
| |
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| |
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| T |
4551753 |
a |
4551753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 3086944 - 3086788
Alignment:
| Q |
1 |
aaaaagattttagtctagattataaaactagagtatttaatttagatggtgttttattatcttcataactgatagaaggaacaaccaata----gcaaca |
96 |
Q |
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||||||||| |||||| ||||||||||||||||||||| || ||||||||||| ||||||||||| | |||||| ||| || ||||| | |||| |
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| T |
3086944 |
aaaaagattctagtcttgattataaaactagagtattt----taaatggtgttttaatatcttcataattaatagaatgaagaaacaatatatagaaaca |
3086849 |
T |
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| Q |
97 |
aacatgtaaacaaaagaaaaaagtgaatcataaattatcttccatacatacctgaatttgg |
157 |
Q |
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| T |
3086848 |
aacttgtaacaagaataaaaaagtgagtcaaaaattatcttccatacaaacctggatttgg |
3086788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 3076888 - 3076848
Alignment:
| Q |
161 |
aaaagtaagctggtagaacataaaatcatcatactttatca |
201 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||| |
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| T |
3076888 |
aaaaataagcttgtagaacataaaatcatcatactttatca |
3076848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 3086767 - 3086729
Alignment:
| Q |
163 |
aagtaagctggtagaacataaaatcatcatactttatca |
201 |
Q |
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||||||| |||||||||||||||||||||||||| |||| |
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| T |
3086767 |
aagtaagttggtagaacataaaatcatcatacttcatca |
3086729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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