View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_35 (Length: 211)
Name: NF19161_low_35
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 19478800 - 19478677
Alignment:
| Q |
70 |
tctactttggtagagtaataaaagcctgatatttttagtacctttcatcaaagtttgtatttgcagctaaattaacaataacatctatttgattgtgaat |
169 |
Q |
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| T |
19478800 |
tctactttggtagagtaataaaagcctgatatttttagtacctttcatcaaagtttgtatttgcagctaaattaacaataacatctatttgattgtgaat |
19478701 |
T |
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| Q |
170 |
ttcttcttttagaatagaatcttc |
193 |
Q |
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| T |
19478700 |
ttcttcctttagaatagaatcttc |
19478677 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 36197998 - 36198052
Alignment:
| Q |
107 |
gtacctttcatcaaagtttgtatttgcagctaaattaacaataacatctatttga |
161 |
Q |
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| T |
36197998 |
gtacctttcatcaaaattagtagttgcagccaaattaataataacatctgtttga |
36198052 |
T |
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