View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_39 (Length: 201)
Name: NF19161_low_39
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 7e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 14773485 - 14773306
Alignment:
| Q |
1 |
ttatgggttgatttttcaacctaattattttaaattactccctcggtgtctagagctcagatgaccaaaattattggttgcatagagctcagctgactaa |
100 |
Q |
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| T |
14773485 |
ttatgggttgatttttcaacctaattattttaaattactccctcggtgtctagagctcagctgactaaaattattggttgcatagagctcagctgactaa |
14773386 |
T |
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| Q |
101 |
atattaattttaggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgctcgtcatggagaagac |
180 |
Q |
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| T |
14773385 |
atattaattttaggtctgatgagacttcaaggaaggcatcatctgaactcttgttaaaaattgctcgtcatggagaagac |
14773306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 15014800 - 15014710
Alignment:
| Q |
87 |
gctcagctgactaaatattaattttaggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgctcgtcatggagaagac |
180 |
Q |
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| T |
15014800 |
gctcagctgactaaatattaattttaggtctgat---tcttcatggaagacatcatctgaactcttgtcaaaaattgctggtcatggagaagac |
15014710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 15047564 - 15047490
Alignment:
| Q |
87 |
gctcagctgactaaatattaattttaggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaat |
161 |
Q |
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| T |
15047564 |
gctcaactgactaattattcatctcaggtctgacgagtcttcatggaaggcatcgtatgagctcttgttaaaaat |
15047490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 17879839 - 17879756
Alignment:
| Q |
84 |
agagctcagctgactaaatattaatttta--ggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgct |
165 |
Q |
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| T |
17879839 |
agagcttagctgactagatattcatcttataggtctgatgagtcttcatgggatgctgcatatgaactcttggtaaaaattgct |
17879756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 51365658 - 51365574
Alignment:
| Q |
93 |
ctgactaaatattaattttaggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgctcgtcatggagaa |
177 |
Q |
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| T |
51365658 |
ctgactaaatattcattttaggtctaatgagtcctcatggaaggcatcgtctaaactccttgtagaaattgctcgtcatggagaa |
51365574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 36877159 - 36877259
Alignment:
| Q |
77 |
gttgcatagagctcagctgactaaatattaattttaggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgctcgtcatggaga |
176 |
Q |
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|||| ||| |||| |||||| |||| ||| ||||||||||||||||||||||| ||| | ||||| ||| |||||| || | |||||| |||||||||| |
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| T |
36877159 |
gttgtataaagcttagctgattaaaaatttattttaggtctgatgagtcttcatggagagtatcatatgatctcttggtacagattgctggtcatggaga |
36877258 |
T |
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| Q |
177 |
a |
177 |
Q |
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| T |
36877259 |
a |
36877259 |
T |
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