View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19161_low_5 (Length: 512)
Name: NF19161_low_5
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 44307051 - 44306588
Alignment:
| Q |
14 |
cacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44307051 |
cacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtcc |
44306952 |
T |
|
| Q |
114 |
aatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgccatttgttgcaaaggctttcaca |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306951 |
aatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgccatttgttgcaaaggctttcaca |
44306852 |
T |
|
| Q |
214 |
aataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaaga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306851 |
aataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaaga |
44306752 |
T |
|
| Q |
314 |
ttcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306751 |
ttcagattcttaccttgtgtaagagacatgatgatgagattgagtatgttgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaa |
44306652 |
T |
|
| Q |
414 |
atctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcctact |
477 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44306651 |
atctggagatacttttactgatgggtctgttagatatacaatgacttctgccgatgttcctact |
44306588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 43896593 - 43896137
Alignment:
| Q |
18 |
gaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtccaatc |
117 |
Q |
| |
|
||||||||||||||||||||||||| | || |||| |||||| | || |||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
43896593 |
gaaatttgtaccaattttcatgggtgttatctgtgatgagagacatgatgggttagaactacttatggagggtgtaattaggtatttgccgggtccaatc |
43896494 |
T |
|
| Q |
118 |
gatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgccatttgttgcaaaggctttcacaaata |
217 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43896493 |
gatgttagtaattatgctcttgatcaaaataggaatggtgagaaagttgaattgtctggaagcattgatgcgccatttgttgcaaaggttttcacaaatg |
43896394 |
T |
|
| Q |
218 |
atcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattca |
317 |
Q |
| |
|
||| | || ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43896393 |
tgattaggaatgatggattagtaacttatctaagaatctatcagggtgttattaagaagggtgattttattacaaatgttaacactggtaagaagattca |
43896294 |
T |
|
| Q |
318 |
gattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatct |
417 |
Q |
| |
|
||||| | |||| |||||||||||||||| |||||||| | | ||||||||||||||||||||| ||| |||| |||| |||||| ||||||||||| |
|
|
| T |
43896293 |
gattcctcgtttgtttaagagacatgatgataagattgaggaagttgatgaagctcatgctggagagattattattgtgttagatgctattcttaaatct |
43896194 |
T |
|
| Q |
418 |
ggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcct |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43896193 |
ggagatactttcactgatgggtctgttagatatacaatgacttctgccgatgttcct |
43896137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 477
Target Start/End: Complemental strand, 44301946 - 44301480
Alignment:
| Q |
17 |
ggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggtta----gaactacttagggagggtgtaattaggtatttgccaagtc |
112 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||| |||||||| ||||||||| |||||||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
44301946 |
ggaaatttgtaccaatttttatgggtattatcagtggtgagagatatgaggggttaattagaactacttatggaggatgtaattaggtatttgccgagtc |
44301847 |
T |
|
| Q |
113 |
caatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgccatttgttgcaaaggctttcac |
212 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
44301846 |
caatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgcgccatttgtagcaaaggttttcac |
44301747 |
T |
|
| Q |
213 |
aaataatcttaacaggagtga------cttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggt |
306 |
Q |
| |
|
|||| | | ||||||| ||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44301746 |
aaatt---tgtattggagtgatggattctt-ttaacttgtctaagaatctatcagggtgttatcaagaagggtgattttattacaaatgttaacactggt |
44301651 |
T |
|
| Q |
307 |
gagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctc |
406 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||| |||| | | | |
|
|
| T |
44301650 |
gagaagattcagatttatagcttgtctaagagacatgatgatgtgattgagtttgttgatgaagctcatgccggagaaattgttattgtgttagctattg |
44301551 |
T |
|
| Q |
407 |
ttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcctact |
477 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
44301550 |
ttcttaaatctggagatacttttactgatgggtctgttagatatacaatgtcttctgccgatgttcctact |
44301480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 91 - 472
Target Start/End: Complemental strand, 44312753 - 44312372
Alignment:
| Q |
91 |
gtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
44312753 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgagc |
44312654 |
T |
|
| Q |
191 |
catttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattac |
290 |
Q |
| |
|
||||||| ||||||| ||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44312653 |
catttgtagcaaaggttttcacaaatatgtataggattaggtacttattaacttatctaagaatctatcagggtgttattaagaagggtgattttattac |
44312554 |
T |
|
| Q |
291 |
aaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgtt |
390 |
Q |
| |
|
||| |||||||||||| |||||||| |||||| | ||| ||||||||||| ||| | ||||| || | | |||||||||||||||||||||||||||| |
|
|
| T |
44312553 |
aaacgttaacactggtaagaagattaagattccttgtttgggtaagagacattatggtaagattaaggaagttgatgaagctcatgctggagaaattgtt |
44312454 |
T |
|
| Q |
391 |
atgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttc |
472 |
Q |
| |
|
| |||| | |||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
44312453 |
tttgtgtttggtgctattcttagatctggagatacttttactgatgggtctgttagatatataatgacttctgccgatgttc |
44312372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 43895669 - 43895619
Alignment:
| Q |
413 |
aatctggagatactttcactgatgggtctgttagatatacaatgacttctg |
463 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
43895669 |
aatctggagatacttttgctgatgggtctgttagatattcaatgacctctg |
43895619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 44306093 - 44306043
Alignment:
| Q |
413 |
aatctggagatactttcactgatgggtctgttagatatacaatgacttctg |
463 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| ||||||| |||| |
|
|
| T |
44306093 |
aatctggagatacttttgctgatgggtccgttagatattcaatgacctctg |
44306043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 84 - 474
Target Start/End: Complemental strand, 18702135 - 18701741
Alignment:
| Q |
84 |
ggagggtgtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtatt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18702135 |
ggagggtgtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaagttgaattgtctggaagtatt |
18702036 |
T |
|
| Q |
184 |
gatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgatt |
283 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | | | ||| | | ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18702035 |
gatgcaccatttgttgcaaaggcttttgcaaattggcatgagaggtatttcaaattaacttatctaagaatctatcagggtgttattaagaagggtgatt |
18701936 |
T |
|
| Q |
284 |
ttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagac-atgatgatgagattgagtatgctgatgaagctcatgctggag |
382 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| | ||| | ||||||| | | | || | || ||| | | |||||||||||||||||||| |
|
|
| T |
18701935 |
ttattacaaatgttaacactggtaagaagattcagattcctcgtttgggcaagagacgaagttaataaaatcgaggaagttgatgaagctcatgctggag |
18701836 |
T |
|
| Q |
383 |
aaattgttatgttgttcgatgctcttcttaaatctggagatactttcactg---atgggtctgttagatatacaatgacttctgcagatgttcct |
474 |
Q |
| |
|
|||||||| | | || ||||||| |||| |||||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18701835 |
aaattgtttttgtttttgatgctcatcttgaatctggagatacttttaccgccaatgggtctgttagatatacaatgacttctgctgatgttcct |
18701741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 47 - 474
Target Start/End: Complemental strand, 4084682 - 4084249
Alignment:
| Q |
47 |
tcagtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaa |
146 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| ||| |
|
|
| T |
4084682 |
tcagtgatgagagatatgaggggttaaaactatttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaa |
4084583 |
T |
|
| Q |
147 |
taagaatggtgagaaaattgaattgtctggaagtattgatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttat |
246 |
Q |
| |
|
|| ||||||||||||| ||||||||| ||||||||||||||| |||||||||| ||||||||||||| || | || | | |||||||||| |
|
|
| T |
4084582 |
taggaatggtgagaaagttgaattgtttggaagtattgatgcaccatttgttggaaaggctttcacatattggcataggccgtttttaaaattaacttat |
4084483 |
T |
|
| Q |
247 |
ctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatg |
346 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||| |||||| | |||| ||||||||||||| |
|
|
| T |
4084482 |
ctaagaatctatcagggtgttatcaagaagggtgattttattacaaatgttaacaccggtaagaagattaagattcctcgtttgtttaagagacatgata |
4084383 |
T |
|
| Q |
347 |
atgagattgagtatgctgatgaagctcatgctggagaaattgtta---tgtt---gttcgatgctcttcttaaatctggagatactttcactgatgggtc |
440 |
Q |
| |
|
|| |||| || | |||||||||||||||||||||| |||||| |||| ||| |||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4084382 |
atacgattaaggcagttgatgaagctcatgctggagaacttgttattgtgttaaagtttgatgctattcttaaatctggagatacttttactgacgggtc |
4084283 |
T |
|
| Q |
441 |
tgttagatatacaatgacttctgcagatgttcct |
474 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||| |
|
|
| T |
4084282 |
tattagatatacaatgacttctgccgatgttcct |
4084249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 49 - 464
Target Start/End: Original strand, 8158794 - 8159230
Alignment:
| Q |
49 |
agtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaata |
148 |
Q |
| |
|
||||| |||||||| |||||| ||||| || ||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
8158794 |
agtgatgagagatatgaggggatagaagtatttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaata |
8158893 |
T |
|
| Q |
149 |
agaatggtgagaaaattgaattgtctggaagtattgatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgactt---attaactta |
245 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || | | | | |||| | || ||||||||| |
|
|
| T |
8158894 |
ggaatggcgagaaagttgaattgtctggaagtattgatgctccatttgttgcaaaggctttcgtaact--tggt-ataggatgtatttaaaattaactta |
8158990 |
T |
|
| Q |
246 |
tctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatg-- |
343 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| | ||| ||||||||| || |
|
|
| T |
8158991 |
cctaagaatttatcagggtgttattaagaagggtgattttattacaaatgttaacactggtaagaagattgagattcctcgtttgggtaagagacgtgaa |
8159090 |
T |
|
| Q |
344 |
-atgatgagattgagtatgctg------------------atgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagata |
424 |
Q |
| |
|
||||||||| |||| | | || |||||||||||||||||||||||||| | |||| ||||||| |||| |||||||||||| |
|
|
| T |
8159091 |
catgatgagagtgaggaagttgataaaatcaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagata |
8159190 |
T |
|
| Q |
425 |
ctttcactgatgggtctgttagatatacaatgacttctgc |
464 |
Q |
| |
|
|||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
8159191 |
cttttaccgatgggtctgttagatatataatgacttctgc |
8159230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 35856724 - 35856802
Alignment:
| Q |
237 |
attaacttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagatt |
315 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| || | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35856724 |
attaacatatctaagaatctatcagggcgttattagaaaaggggattttattactaatgttaacactggtgagaagatt |
35856802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 35856591 - 35856703
Alignment:
| Q |
100 |
tatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgccatttgttg |
199 |
Q |
| |
|
|||||||| |||||||| ||| | |||||||||||||||||| | || |||||| |||||| | |||||||||||||||||||||| ||| ||||| | |
|
|
| T |
35856591 |
tatttgccgagtccaattgatttgagtaattatgctcttgatcaagctaggaatggagagaaagtagaattgtctggaagtattgatgggccgtttgtcg |
35856690 |
T |
|
| Q |
200 |
caaaggctttcac |
212 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
35856691 |
cattggctttcac |
35856703 |
T |
|
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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 461
Target Start/End: Complemental strand, 15040348 - 15040305
Alignment:
| Q |
418 |
ggagatactttcactgatgggtctgttagatatacaatgacttc |
461 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
15040348 |
ggagatacttttactgatgggtctgttaaatatacaatgacttc |
15040305 |
T |
|
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 10541444 - 10541388
Alignment:
| Q |
249 |
aagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactgg |
305 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
10541444 |
aagaatctatgagggtgtcattcggaagggagattttattacaaatgataacactgg |
10541388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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