View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19161_low_6 (Length: 505)
Name: NF19161_low_6
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19161_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Complemental strand, 53713437 - 53712967
Alignment:
| Q |
19 |
agtagaacatgaaaaatttatactattcaacaagtttgcgttgtaactcccaccactaatttaattatctcttttggattgagtacataaatgtaacttt |
118 |
Q |
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| T |
53713437 |
agtagaacatgaaaaatttgtactattcaacaagtttgcattgtaactcccaccactaatttaattatctcttttggattgagtacataaatgtaacttt |
53713338 |
T |
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| Q |
119 |
cgtagtaatagtgcaaaatatttagtattagttttagattgagcatcctcacttataaacgtaaatagtagatgatagaaatctgatagctgatgaatca |
218 |
Q |
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| T |
53713337 |
cgtagtaatagtgcaaaatatttagtattagttttagattgagcatcctcacttata--------tagtagatgatagaaatctgatagccgatgaatca |
53713246 |
T |
|
| Q |
219 |
acgaattttaaagatgttttaatatcatctaaaaaattgtgattgaatctaacacaaccccacaaaacagtttgtgagatgaagattgtctcattcaacc |
318 |
Q |
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| T |
53713245 |
aaggattttaaagacgttttaatatcatctaaaaaattgtgattgaatctaacacaattccataaaacggtttgtgagatgaagattgtctcattcaatc |
53713146 |
T |
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| Q |
319 |
gatgtaaaactcttttaacacaaatcaatatttttgtttttcttatttaaaaagggatcatttggtgcaaccccgattgaggctatctatctgtgtccgc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53713145 |
gatgtaaaactcttttaacacaaatcaatatttttgtttttcttatttaaaaagggatcatttggtgcaaccccgattgaggctatctatctgtgtccgc |
53713046 |
T |
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| Q |
419 |
tgtttgttttgatataaacgattttaggtgaagaatatgcgtgattgacaaaaacacttgaagtatgaaatatgatgatg |
498 |
Q |
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| T |
53713045 |
tgtttgttttgatataaacgattttaggtgaagaatatgcgtgattgacaaaaacacttgaagtatg-aatatgatgatg |
53712967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 5398177 - 5398220
Alignment:
| Q |
243 |
tcatctaaaaaattgtgattgaatctaacacaaccccacaaaac |
286 |
Q |
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| T |
5398177 |
tcatcttaaaaatcgtggttgaatctaacacaaccccacaaaac |
5398220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 16163024 - 16162979
Alignment:
| Q |
240 |
atatcatctaaaaaattgtgattgaatctaacacaaccccacaaaa |
285 |
Q |
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| T |
16163024 |
atatcatcttaaaaattgtggttgagtctaacacaaccccacaaaa |
16162979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 32908943 - 32908991
Alignment:
| Q |
238 |
taatatcatctaaaaaattgtgattgaatctaacacaaccccacaaaac |
286 |
Q |
| |
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||||||||||| | |||||||| |||| ||||||||||||||||||||| |
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| T |
32908943 |
taatatcatcttagaaattgtggttgagtctaacacaaccccacaaaac |
32908991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 36352150 - 36352198
Alignment:
| Q |
238 |
taatatcatctaaaaaattgtgattgaatctaacacaaccccacaaaac |
286 |
Q |
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| T |
36352150 |
taataccatcttaaaaattgtggttgaacctaacacaaccccacaaaac |
36352198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 26272306 - 26272385
Alignment:
| Q |
229 |
aagatgttttaatatcatctaaaaaattgtgattgaatctaacacaaccccacaaaa-cagtttgtgagatgaagattgt |
307 |
Q |
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| T |
26272306 |
aagatgctttgatatcatcttagaaattgtggttgggtctaacacaaccccacaaaatcagcttgtgaggtgacgattgt |
26272385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 20830828 - 20830774
Alignment:
| Q |
253 |
aattgtgattgaatctaacacaaccccacaaaa-cagtttgtgagatgaagattg |
306 |
Q |
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|||||||||||| |||||||||||| ||||||| ||||||||||| ||| ||||| |
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| T |
20830828 |
aattgtgattgagtctaacacaacctcacaaaatcagtttgtgaggtgatgattg |
20830774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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