View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19161_low_9 (Length: 417)

Name: NF19161_low_9
Description: NF19161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19161_low_9
NF19161_low_9
[»] chr3 (22 HSPs)
chr3 (9-398)||(22458899-22459288)
chr3 (9-398)||(22481880-22482269)
chr3 (116-264)||(22431704-22431852)
chr3 (118-232)||(22631054-22631168)
chr3 (133-197)||(22358625-22358689)
chr3 (133-197)||(22636126-22636190)
chr3 (9-77)||(22437395-22437463)
chr3 (7-77)||(22431909-22431979)
chr3 (9-94)||(22207648-22207733)
chr3 (8-77)||(22632626-22632695)
chr3 (8-77)||(22636267-22636336)
chr3 (118-232)||(22632450-22632564)
chr3 (8-77)||(22358766-22358835)
chr3 (130-232)||(22468533-22468635)
chr3 (25-74)||(2748680-2748729)
chr3 (25-74)||(2768751-2768800)
chr3 (25-74)||(2839007-2839056)
chr3 (25-74)||(2856217-2856266)
chr3 (8-77)||(22443500-22443569)
chr3 (8-77)||(22631230-22631299)
chr3 (116-264)||(22368465-22368613)
chr3 (275-367)||(22632306-22632398)
[»] chr4 (1 HSPs)
chr4 (276-363)||(29611001-29611088)


Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 398
Target Start/End: Complemental strand, 22459288 - 22458899
Alignment:
Q  9 aatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatatgatttgtcaggaacaaccttctggatttgct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22459288 aatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatatgatttgtcaggaacaaccttctggatttgct 22459189  T
Q  109 aactttgtcaaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaataagtgaaatgaatgatacaagtggaaaagaac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22459188 aactttgtcaaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaattagtgaaatgaatgatacaagtggaaaagaac 22459089  T
Q  209 atagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaattttgtatcgatga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22459088 atagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaattttgtatcgatga 22458989  T
Q  309 agatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccattgt 398  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22458988 agatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagagaagtgcacacaattgtcaccattgt 22458899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 398
Target Start/End: Complemental strand, 22482269 - 22481880
Alignment:
Q  9 aatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatatgatttgtcaggaacaaccttctggatttgct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22482269 aatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatatgatttgtcaggaacaaccttctggatttgct 22482170  T
Q  109 aactttgtcaaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaataagtgaaatgaatgatacaagtggaaaagaac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22482169 aactttgtcaaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaattagtgaaatgaatgatacaagtggaaaagaac 22482070  T
Q  209 atagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaattttgtatcgatga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22482069 atagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaattttgtatcgatga 22481970  T
Q  309 agatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccattgt 398  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22481969 agatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagagaagtgcacacaattgtcaccattgt 22481880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 22431852 - 22431704
Alignment:
Q  116 tcaaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaataagtgaaatgaatgatacaagtggaaaagaacatagctt 215  Q
    |||||||||  |||||||||| ||||||||| |||||||||||||| |||||||||| ||| |||||||| || |||||||||| |||||| ||| ||||    
T  22431852 tcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaagtgaaaaagatcatggctt 22431753  T
Q  216 gcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaac 264  Q
     ||||||||||| |||| |||  |||  ||||  ||| |||||||||||    
T  22431752 ccatatccaatcttcttcggataaagcatcaactagttctgcaacaaac 22431704  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 22631168 - 22631054
Alignment:
Q  118 aaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaataagtgaaatgaatgatacaagtggaaaagaacatagcttgc 217  Q
    |||||||  |||||||||| |||||| || |||||||||||||| |||||||||||||| || ||||| || || ||||||| |||||| ||| |||| |    
T  22631168 aaaactaagattcttcgtctccaaattgcttacaagattcagaacatcaaatcccaaattagagaaataaaagaaacaagtgaaaaagatcatggcttcc 22631069  T
Q  218 atatccaatcatctt 232  Q
    | |||||||| ||||    
T  22631068 acatccaatcttctt 22631054  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 22358689 - 22358625
Alignment:
Q  133 cgtcgccaaatagcatacaagattcagaaaatcaaatcccaaataagtgaaatgaatgatacaag 197  Q
    |||| ||||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||    
T  22358689 cgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaag 22358625  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 22636190 - 22636126
Alignment:
Q  133 cgtcgccaaatagcatacaagattcagaaaatcaaatcccaaataagtgaaatgaatgatacaag 197  Q
    |||| ||||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||    
T  22636190 cgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaag 22636126  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 22437463 - 22437395
Alignment:
Q  9 aatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 77  Q
    ||||||||||||||| ||| |||| |||||||||||||||| |||  |||||||||||||||| |||||    
T  22437463 aatcaaagcaaggatgaagaagctaatagaagcatcttttgacatagaagatgtcattgatgattatat 22437395  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 22431979 - 22431909
Alignment:
Q  7 gaaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 77  Q
    ||||||||||||| |||||| ||||| |||||||||||||||  |||  |||||||||||||||| |||||    
T  22431979 gaaatcaaagcaaagatcaaacagctgatagaagcatcttttcacatagaagatgtcattgatgattatat 22431909  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 22207648 - 22207733
Alignment:
Q  9 aatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatatgatttgtcaggaacaac 94  Q
    ||||||||||| |||||  ||||| | |||||||||||||   || |||||||||||||||||||||||||| ||| ||| |||||    
T  22207648 aatcaaagcaaagatcagacagctgagagaagcatcttttcagatacaagatgtcattgatgaatatatgatatgtgagggacaac 22207733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 22632695 - 22632626
Alignment:
Q  8 aaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 77  Q
    |||||||||  | |||||||||||| |||||||||||||||  |||| |||||||||||||||| |||||    
T  22632695 aaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattgatgattatat 22632626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 22636336 - 22636267
Alignment:
Q  8 aaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 77  Q
    |||||||||  | |||||||||||| |||||||||||||||  |||| |||||||||||||||| |||||    
T  22636336 aaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattgatgattatat 22636267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 22632564 - 22632450
Alignment:
Q  118 aaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaataagtgaaatgaatgatacaagtggaaaagaacatagcttgc 217  Q
    |||||||  |||||||||| |||||| ||  ||||||||||||| |||||||||  ||| || ||||| || || ||||||| |||||| ||| |||| |    
T  22632564 aaaactaagattcttcgtctccaaattgctgacaagattcagaacatcaaatccagaattagagaaataaaagaaacaagtgaaaaagatcatggcttcc 22632465  T
Q  218 atatccaatcatctt 232  Q
    | |||||||| ||||    
T  22632464 acatccaatcttctt 22632450  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 22358835 - 22358766
Alignment:
Q  8 aaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 77  Q
    |||||||||  | |||||||||||| |||||||||||||||  |||  |||||||||||||||| |||||    
T  22358835 aaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatat 22358766  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 22468635 - 22468533
Alignment:
Q  130 cttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaataagtgaaatgaatgatacaagtggaaaagaacatagcttgcatatccaatcat 229  Q
    ||||||| ||||||| | |||||||||||||| ||||| |||| ||| || ||||| || || ||||||| |||||| ||| ||||  | |||||||| |    
T  22468635 cttcgtctccaaataacttacaagattcagaacatcaagtcccgaatcagagaaataaaagaaacaagtgcaaaagatcatggcttcaacatccaatctt 22468536  T
Q  230 ctt 232  Q
    |||    
T  22468535 ctt 22468533  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 2748680 - 2748729
Alignment:
Q  25 aagcagctcatagaagcatcttttggcattcaagatgtcattgatgaata 74  Q
    |||||||| | ||||||||| ||| ||||| |||||||||||||||||||    
T  2748680 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaata 2748729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 2768751 - 2768800
Alignment:
Q  25 aagcagctcatagaagcatcttttggcattcaagatgtcattgatgaata 74  Q
    |||||||| | ||||||||| ||| ||||| |||||||||||||||||||    
T  2768751 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaata 2768800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 2839056 - 2839007
Alignment:
Q  25 aagcagctcatagaagcatcttttggcattcaagatgtcattgatgaata 74  Q
    |||||||| | ||||||||| ||| ||||| |||||||||||||||||||    
T  2839056 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaata 2839007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 2856266 - 2856217
Alignment:
Q  25 aagcagctcatagaagcatcttttggcattcaagatgtcattgatgaata 74  Q
    |||||||| | ||||||||| ||| ||||| |||||||||||||||||||    
T  2856266 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaata 2856217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 22443569 - 22443500
Alignment:
Q  8 aaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 77  Q
    |||||||||||| |||||| ||| | |||||||||||||||   ||  |||||||||||||||| |||||    
T  22443569 aaatcaaagcaatgatcaaacagttgatagaagcatcttttcatatagaagatgtcattgatgattatat 22443500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 22631299 - 22631230
Alignment:
Q  8 aaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 77  Q
    |||||||||  | |||||||||||| ||||||||||||||   |||  |||||||||||||||| |||||    
T  22631299 aaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatat 22631230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 22368613 - 22368465
Alignment:
Q  116 tcaaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaataagtgaaatgaatgatacaagtggaaaagaacatagctt 215  Q
    ||||||||| ||  || |||| |||||| || || ||||||||||| ||||| |||||||| || ||||| || || ||||||| ||| || |||  |||    
T  22368613 tcaaaactacaaaactacgtctccaaattgcttataagattcagaacatcaattcccaaattagggaaataaaagaaacaagtgaaaaggatcatgactt 22368514  T
Q  216 gcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaac 264  Q
      | |||||||| ||||||||  |||  ||||| ||| |||||||||||    
T  22368513 cgacatccaatcttctttggataaagcatcaagtagttctgcaacaaac 22368465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 367
Target Start/End: Complemental strand, 22632398 - 22632306
Alignment:
Q  275 agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagagg 367  Q
    ||||||||||| | |||| ||||| ||| ||||||| ||||||||| || |||||||  |||| | | | ||||||| ||||| |||||||||    
T  22632398 agaaccttcgagacgctccattttatatggatgaagctgatgttgtgggatttgaagagccaatagagaaactaattaattggctggtagagg 22632306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 363
Target Start/End: Complemental strand, 29611088 - 29611001
Alignment:
Q  276 gaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggta 363  Q
    ||||||||||||||||| |||||  || ||||||| ||| |||| |||||||||||  |||||| | ||| ||||||||||| |||||    
T  29611088 gaaccttcgaaaggctccattttacatggatgaagctgacgttgcaggctttgaagagccaagagaaatattaattgattggctggta 29611001  T

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