View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19162_high_10 (Length: 209)
Name: NF19162_high_10
Description: NF19162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19162_high_10 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 416868 - 416698
Alignment:
| Q |
39 |
accaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttatgaccaccaatatggtaacatgccaaaactgatat |
138 |
Q |
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| T |
416868 |
accaatgacccataatttttccatctggtccatgactaaatgtgattaaattgccagcatacttatgaccaccaatatgagaacatgccaaaactgatat |
416769 |
T |
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| Q |
139 |
ctgatctttcaatcctcggagctgaatttcttttttgaacttgtcaatgagcacagagccacaaacaccac |
209 |
Q |
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| T |
416768 |
ctgatctttcaatcctcggagctgaacttcttcattgaacttgtcaatgagcacaggcccacaaacaccac |
416698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 398485 - 398598
Alignment:
| Q |
92 |
ccagcatagttatgaccaccaatatggtaacatgccaaaactgatatctgatctttcaatcctcggagctgaatttcttttttgaacttgtcaatgagca |
191 |
Q |
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| T |
398485 |
ccagcatatttatgaccaccaatatgagagcatgccataactgatatctgatctttcaatcctctgagctgaatgtcttcattgagcttgtcaatgagaa |
398584 |
T |
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| Q |
192 |
cagagccacaaaca |
205 |
Q |
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| T |
398585 |
caggtccacaaaca |
398598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 405599 - 405527
Alignment:
| Q |
137 |
atctgatctttcaatcctcggagctgaatttcttttttgaacttgtcaatgagcacagagccacaaacaccac |
209 |
Q |
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| T |
405599 |
atctgatctttaaatcctttgagctgaatttcttcattgagcttgtcaatgagaacaggcccacaaacaccac |
405527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 22513714 - 22513814
Alignment:
| Q |
14 |
acatcatcacgagtaacatagccataccaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttatgaccaccaa |
113 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22513714 |
acatcattacgagtaacatagccataccaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttatgaccaccaa |
22513813 |
T |
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| Q |
114 |
t |
114 |
Q |
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| T |
22513814 |
t |
22513814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 22517025 - 22517118
Alignment:
| Q |
114 |
tatggtaacatgccaaaactgatatctgatctttcaatcctcggagctgaatttcttttttgaacttgtcaatgagcacagagccacaaacacc |
207 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22517025 |
tatgataacatgccaaaactgatatctgatctttcaatcctcggagctgaatttcttctttgaacttgtcaatgagcacagagccacaaacacc |
22517118 |
T |
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