View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19162_high_7 (Length: 242)
Name: NF19162_high_7
Description: NF19162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19162_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 22517102 - 22517291
Alignment:
| Q |
1 |
acagagccacaaacaccacacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgcaaaattcttgtaattggtt |
100 |
Q |
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| T |
22517102 |
acagagccacaaacaccgcacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgcaaaattcttgtaattggtt |
22517201 |
T |
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| Q |
101 |
cacactgtccatccaagatcattccactttggtcaccagaaacaaggcgaagaaagttgatgtcaaaatataatactgtcaagggaacac |
190 |
Q |
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| T |
22517202 |
cacactgtccatccaagatcattccactttggtcaccagaaacaaggcgaagagagttgatgtcaaaatataatactgtcaagggaacac |
22517291 |
T |
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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 416710 - 416635
Alignment:
| Q |
7 |
ccacaaacaccacacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
82 |
Q |
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| T |
416710 |
ccacaaacaccacacctcacgtcacgacttccatgagcacacacaaaaatatatgaacctgctatcacgtcttgca |
416635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 405539 - 405464
Alignment:
| Q |
7 |
ccacaaacaccacacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
82 |
Q |
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| T |
405539 |
ccacaaacaccacacctcacatcacgacttccgtgagcacacacaaaattatatgaacctgctatcacatcttgca |
405464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 399821 - 399897
Alignment:
| Q |
7 |
ccacaaacaccacacctcacg-tcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
82 |
Q |
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| T |
399821 |
ccacaaacagcacaccttacaatcacgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
399897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 9709941 - 9710003
Alignment:
| Q |
120 |
cattccactttggtcaccagaaacaaggcgaagaaagttgatgtcaaaatataatactgtcaa |
182 |
Q |
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| T |
9709941 |
cattccactctggtcaccagaaaccaggagaagagacttgatgtcaaaatataattctgtcaa |
9710003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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