View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19162_low_2 (Length: 542)
Name: NF19162_low_2
Description: NF19162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19162_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 47920499 - 47919981
Alignment:
| Q |
18 |
tacttaaacccaatacaataagtcagattaaatacatagaaagcaagaaagtggattaatccaccaattagagtaaacaatatttcctacttttttcttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47920499 |
tacttaaacccaatacaataagtcagattaaatacatagaaagcaagaaagtggattaatccaccaattagagtaaacaatatt-cctacttttttcttt |
47920401 |
T |
|
| Q |
118 |
ctctattaaggaatcaagagtcaagaccatggcatcagcttaattctatcaaccatttcggtgatcttcactactttcccattataatgtcattgctttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47920400 |
ctctattaaggaatcaagagtcaagaccatggcatcagcttaattctatcaaccatttccgtgatcttcactactttcccattataatgtcattgctttc |
47920301 |
T |
|
| Q |
218 |
caaccaaatgcaccacgccggagatagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47920300 |
caaccaaatgcaccacgccggagatagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaatc |
47920201 |
T |
|
| Q |
318 |
aattcgtctccctacttcgttgtgttcccatccaagtactgagcagcttgcagtaaatgattggcagttacgatttttctaaaacacaatacacaacatt |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47920200 |
aatttgtctccctacttcgttgtgttcccatccaagtactgagcagcttgcagtaaatgattggcagttacgatttttctaaaacacaatacacaacatt |
47920101 |
T |
|
| Q |
418 |
gttggtgcatatcttgaattattttccataatttcagccgagttgataatttgtcttgaagtaatcttcatccgaacattattattttagatggtactgt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47920100 |
gttggtgcatatcttgaattattttccataatttcagccgagttgataatttgtcttgaagtaatcttcatccgaacattattattttagatggtactgt |
47920001 |
T |
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| Q |
518 |
agttttccacatcctatgct |
537 |
Q |
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||||||||||||||| |||| |
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| T |
47920000 |
agttttccacatcctctgct |
47919981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 537
Target Start/End: Complemental strand, 47926376 - 47926236
Alignment:
| Q |
399 |
aaacacaatacacaacattgttggtgcatatcttgaatta------ttttccataatttcagccgagttgataatttgtcttgaagtaatcttcatccga |
492 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||| ||||| |||||| ||||||||| |||| || |
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| T |
47926376 |
aaacacaatacacaacattgttagtgcatatcttgaattacacatcttttccatactttcacccgagtttataatctgtcttcaagtaatctccatctga |
47926277 |
T |
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| Q |
493 |
acattattattttagatggtactgtagttttccacatcctatgct |
537 |
Q |
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| T |
47926276 |
a----attattttagatggtactgtagttttccagatcctctgct |
47926236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 47926528 - 47926466
Alignment:
| Q |
40 |
tcagattaaatacatagaaagcaagaaagtggattaatccaccaattagagtaaacaatattt |
102 |
Q |
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| T |
47926528 |
tcagattaaatacattgaaagcaggaaagtggattgatccaccaattagagtaaacaatattt |
47926466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 589221 - 589304
Alignment:
| Q |
17 |
atacttaaacccaatacaataagtcagattaaatacatagaaagcaagaaagtggattaatccaccaattagagtaaacaatatt |
101 |
Q |
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| T |
589221 |
atactcaaatccaatacaa-aattcagatcgaatacattgaaagcaagaaagtggattagtccaccaattagagaaaacaatatt |
589304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 589444 - 589522
Alignment:
| Q |
242 |
tagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaatcaat |
320 |
Q |
| |
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| T |
589444 |
tagtcaaattagatgagacaccttcctaccattttttcctttacaaacctcatgaaagagtagaaagttatcaaccaat |
589522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 482
Target Start/End: Original strand, 589623 - 589722
Alignment:
| Q |
388 |
cgatttttctaaaacacaatacacaacattgttggtgcatatcttgaatta------ttttccataatttcagccgagttgataatttgtcttgaagtaa |
481 |
Q |
| |
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| T |
589623 |
cgatttctctaaagcaaaatacacaatattgttggtgcacatcttgaattacacctcttttccataattccacccgagttggtaa-ctgtcttgaagtaa |
589721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 44350496 - 44350456
Alignment:
| Q |
61 |
caagaaagtggattaatccaccaattagagtaaacaatatt |
101 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
44350496 |
caagaaggtggattaatccaccaattagagtaaacaatatt |
44350456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 24888704 - 24888656
Alignment:
| Q |
37 |
aagtcagattaaatacatagaaagcaagaaagtggattaatccaccaat |
85 |
Q |
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| T |
24888704 |
aagttagatcaaatacattgaaagcaagaaagtggattcatccatcaat |
24888656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 341
Target Start/End: Original strand, 13957700 - 13957825
Alignment:
| Q |
216 |
tccaaccaaatgcaccacgccggagatagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaa |
315 |
Q |
| |
|
|||| ||||||||||||| | | || ||| |||| ||||||||||| |||||| ||||||||||||| || ||||| || || | || |||||| |||| |
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| T |
13957700 |
tccatccaaatgcaccacactgtagctagccaaaacagatgagacaccttcctaccattcttccctttgcaaacctctttgaagaataaaaaattgtcaa |
13957799 |
T |
|
| Q |
316 |
tcaattcgtctccctacttcgttgtg |
341 |
Q |
| |
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|||||| |||| | || |||||||| |
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| T |
13957800 |
ccaattcatctctccacctcgttgtg |
13957825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 329
Target Start/End: Complemental strand, 9936499 - 9936373
Alignment:
| Q |
203 |
aatgtcattgctttccaaccaaatgcaccacgccggagatagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagt |
302 |
Q |
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||||||||| | |||||||| |||||||| | || || || |||||||||||||||| || ||| || |||| ||||| || ||||| ||||| ||| |
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| T |
9936499 |
aatgtcattacgctccaaccatatgcaccatgtcgtagctaaccaaattagatgagacaactttctatcagtctttccttttcaaacctctttaaagagt |
9936400 |
T |
|
| Q |
303 |
agaaaattatcaatcaattcgtctccc |
329 |
Q |
| |
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||||||| ||| | |||||| |||||| |
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| T |
9936399 |
agaaaatcatcgaccaattcatctccc |
9936373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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