View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19162_low_3 (Length: 514)
Name: NF19162_low_3
Description: NF19162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19162_low_3 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 5 - 514
Target Start/End: Original strand, 22513234 - 22513744
Alignment:
| Q |
5 |
catagtactaatcaatgtaatgaattgagtcaaaataaacttccaccgaatcacagtctgaaacaatatatctcttggcagcagctccacgacaacaaat |
104 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22513234 |
catagtagtaatcaatgtaatgaattgagtcaaaataaacttccaccgaatcacagtctgaaacaatatatctcttggcagcagctccacgacaacaaat |
22513333 |
T |
|
| Q |
105 |
atcaggtggcttaggcgggagtggaggttgtgtcgatagattttctatcttttgatcttcacttacttgtaaagtattggcagtatgcttctggcattct |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22513334 |
atcaggtggcttaggcgggagtggaggttgtgtcgatagattttctatcttttgatcttcagttacttgtaaagtattggcagtatgcttctggcattct |
22513433 |
T |
|
| Q |
205 |
ttatttttagatggtaaaactaaagacttgttcacatccatatcccaatcttccttgacagaattacattgtgtaattataccgcaaccattgttctctt |
304 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22513434 |
ttatttttagatggtaaaactaaagacttgttcacatccatatcccaatcttccttgacagaattacattgtgtaattataccgcaaccattgttctctt |
22513533 |
T |
|
| Q |
305 |
tttcattcacacgtaaaaactttgacttatcacttctgcgtgtttctacttcaactgtttctgctgctatcagaatcctcactgcttgttgtaaaccagc |
404 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
22513534 |
tttcattcacatgtaaaaactttgacgcatcacttctgcgtgtttctacttcaactgttcctgctgctatcagaatcctcattgcttgttgtaaaccagc |
22513633 |
T |
|
| Q |
405 |
tctcata-ttttccctatcaattgaattcaatttgtagccgatcctttccttggcaatgtgttggtctagcaaggcaagcacatcattacgagtaacata |
503 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22513634 |
tctcatatttttccctatcaattgaattcaatttgtagccgatcctttccttggcaatgtgttggtctagcaaggcaagcacatcattacgagtaacata |
22513733 |
T |
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| Q |
504 |
gccataccaat |
514 |
Q |
| |
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||||||||||| |
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| T |
22513734 |
gccataccaat |
22513744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 143 - 305
Target Start/End: Complemental strand, 42313865 - 42313703
Alignment:
| Q |
143 |
gattttctatcttttgatcttcacttacttgtaaagtattggcagtatgcttctggcattctttatttttagatggtaaaactaaagacttgttcacatc |
242 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42313865 |
gattttctatcttttgatcttcacttatatgtaaagtattggcagtatgcttctggcattctttatttttagatggtaaaactaaagacttgtccacatc |
42313766 |
T |
|
| Q |
243 |
catatcccaatcttccttgacagaattacattgtgtaattataccgcaaccattgttctcttt |
305 |
Q |
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||||||||| |||||||||||||||| ||| || || |||||||||||||||| |||||||| |
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| T |
42313765 |
catatcccagtcttccttgacagaatcacaccgtttagttataccgcaaccatttttctcttt |
42313703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 42309897 - 42309733
Alignment:
| Q |
144 |
attttctatcttttgatcttcacttacttgtaaagtattggcagtatgcttctggcattctttatt---tttagatggtaaaactaaagacttgttcaca |
240 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||| || ||||||||| ||| | || | |||| |||| |
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| T |
42309897 |
attttctatcttttgatcttcattaacttgtaaagtattggcaacatgcttctggtattcttcgttgagtttagatggaaaagttgaacagttgtccaca |
42309798 |
T |
|
| Q |
241 |
tccatatcccaatcttccttgacagaattacattgtgtaattataccgcaaccattgttctcttt |
305 |
Q |
| |
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||||||||| ||||||||||||||| |||| |||||||| ||||||||| |||||||||| |
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| T |
42309797 |
tccatatcctggtcttccttgacagaactacaccgtgtaattttaccgcaacagctgttctcttt |
42309733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 42308856 - 42308788
Alignment:
| Q |
237 |
cacatccatatcccaatcttccttgacagaattacattgtgtaattataccgcaaccattgttctcttt |
305 |
Q |
| |
|
||||||||||||| |||| |||||||||| || |||||||||||||||||||| ||||||||||| |
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| T |
42308856 |
cacatccatatcctcgtctttcttgacagaaccgcactgtgtaattataccgcaaccgttgttctcttt |
42308788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 42308677 - 42308597
Alignment:
| Q |
227 |
aagacttgttcacatccatatcccaatcttccttgacagaattacattgtgtaattataccgcaaccattgttctcttttt |
307 |
Q |
| |
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|||| |||| ||||||||||||| |||| |||||||||| ||| ||||||||| |||| ||||| || |||||||||| |
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| T |
42308677 |
aagagttgtccacatccatatcctggtctttcttgacagaaccacactgtgtaattgtaccacaaccgtttttctcttttt |
42308597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 333 - 442
Target Start/End: Complemental strand, 31321632 - 31321523
Alignment:
| Q |
333 |
atcacttctgcgtgtttctacttcaactgtttctgctgctatcagaatcctcactgcttgttgtaaaccagctctcatattttccctatcaattgaattc |
432 |
Q |
| |
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|||||||||| ||||| |||||||||||| | |||||||||| ||||| || | | ||||||||||||||||||||||||| || || |||||||||||| |
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| T |
31321632 |
atcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctctctgtcaattgaattc |
31321533 |
T |
|
| Q |
433 |
aatttgtagc |
442 |
Q |
| |
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|||||||||| |
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| T |
31321532 |
aatttgtagc |
31321523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 335 - 442
Target Start/End: Complemental strand, 31333883 - 31333776
Alignment:
| Q |
335 |
cacttctgcgtgtttctacttcaactgtttctgctgctatcagaatcctcactgcttgttgtaaaccagctctcatattttccctatcaattgaattcaa |
434 |
Q |
| |
|
|||||||| ||||| |||||||||||| | |||||||||| | ||| || | ||||||||||| ||| ||||||||||| || | || ||||||||||| |
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| T |
31333883 |
cacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctctttgtcgattgaattcaa |
31333784 |
T |
|
| Q |
435 |
tttgtagc |
442 |
Q |
| |
|
|||||||| |
|
|
| T |
31333783 |
tttgtagc |
31333776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 452 - 511
Target Start/End: Complemental strand, 417019 - 416960
Alignment:
| Q |
452 |
ccttggcaatgtgttggtctagcaaggcaagcacatcattacgagtaacatagccatacc |
511 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
417019 |
ccttggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacc |
416960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 452 - 510
Target Start/End: Complemental strand, 405937 - 405879
Alignment:
| Q |
452 |
ccttggcaatgtgttggtctagcaaggcaagcacatcattacgagtaacatagccatac |
510 |
Q |
| |
|
|||||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
405937 |
ccttggcaatatgttgatccagcaaggcaggcacatcattaggagtaacatagccatac |
405879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 510
Target Start/End: Original strand, 398183 - 398238
Alignment:
| Q |
455 |
tggcaatgtgttggtctagcaaggcaagcacatcattacgagtaacatagccatac |
510 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||| |||||||||| |||||| |
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| T |
398183 |
tggcaatgtgttgatccagcaaggcagacacatcattaggagtaacataaccatac |
398238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 335 - 442
Target Start/End: Original strand, 2041 - 2148
Alignment:
| Q |
335 |
cacttctgcgtgtttctacttcaactgtttctgctgctatcagaatcctcactgcttgttgtaaaccagctctcatattttccctatcaattgaattcaa |
434 |
Q |
| |
|
|||||||| ||||| |||||||||||| | |||||||||| | ||| || | ||||||||||| ||| ||||||||||| || | || ||||||||||| |
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| T |
2041 |
cacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctctttgtcgattgaattcaa |
2140 |
T |
|
| Q |
435 |
tttgtagc |
442 |
Q |
| |
|
|||||||| |
|
|
| T |
2141 |
tttgtagc |
2148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 48122739 - 48122796
Alignment:
| Q |
20 |
tgtaatgaattgagtcaaaataaacttccaccgaatcacagtctgaaacaatatatct |
77 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
48122739 |
tgtaatgaattgagttgtaataaacttccactgaatcacagtctgaaacaatatatct |
48122796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 13884016 - 13884072
Alignment:
| Q |
80 |
tggcagcagctccacgacaacaaatatcaggtggcttaggcgggagtggaggttgtg |
136 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||||||||| ||| |||||||||||| |
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|
| T |
13884016 |
tggcagcaactccacgacaacataaatcaggtggcttaggagggggtggaggttgtg |
13884072 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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