View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19162_low_4 (Length: 446)
Name: NF19162_low_4
Description: NF19162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19162_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 21056292 - 21055881
Alignment:
| Q |
1 |
agcacataaatacctatcatagtaatttcccaaacgaatcaaatacatgcaatgataagaaagtttccagacacaatgagcaacaccttctcaatgtagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21056292 |
agcacataaatacctatcatagtaatttcccaaacgaatcaaatacatgcaatgataagaaagtttgcagacacaatgagcaacaccttctcaatgtagc |
21056193 |
T |
|
| Q |
101 |
cggacatcaactttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaatgctgcttgcagtaagtaaactta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
21056192 |
cggacatcaactttttctatatctaatctactttacaataagcatgccattgtcaagttaaactcaaacactccaatgcaacttccagtaagtaaactta |
21056093 |
T |
|
| Q |
201 |
tccgcaactccaaaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056092 |
tccgcaactccaaaaatagaggtatacaatgcatcactggagcacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaa |
21055993 |
T |
|
| Q |
301 |
ccaaataatatcattcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagcaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055992 |
ccaaataatatcattcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagcaaga |
21055893 |
T |
|
| Q |
401 |
aataaaccagat |
412 |
Q |
| |
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|||||||||||| |
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| T |
21055892 |
aataaaccagat |
21055881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 413
Target Start/End: Original strand, 26365673 - 26366064
Alignment:
| Q |
15 |
tatcatagtaatttcccaaac-gaatcaaatacatgcaatgataagaaagtttccagacacaatgagcaacaccttctcaatgtagccggacatcaactt |
113 |
Q |
| |
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||||||| |||||||||||| ||||||||| ||||||||| || | | |||| | |||||||||||||| ||||||||||| |||| ||| |||||||| |
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| T |
26365673 |
tatcatattaatttcccaaatagaatcaaatgcatgcaatgcta-gcatgtttgctgacacaatgagcaaaaccttctcaatctagctggatatcaactt |
26365771 |
T |
|
| Q |
114 |
tttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaatgctgcttgcagtaagtaaacttatccgcaactccaa |
213 |
Q |
| |
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||||||||| |||| | ||| ||||| |||||||||| |||| |||||| ||||||||| ||| |||| || ||||||||||| || |||| |||| |
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| T |
26365772 |
tttctatattcaatcaaatttcctataggcatgccattttcaaattaaacccaaacactc---tgcagcttccaataagtaaacttgtcaacaac-ccaa |
26365867 |
T |
|
| Q |
214 |
aaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatca |
313 |
Q |
| |
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||| ||||||||||||||||||||| | | |||||||| |||| | ||||| ||| |||||||||| |||||||||| ||||||| |||||| |||| |
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| T |
26365868 |
aaa-agaggtatacaatgcatcact--actgcattgttgattcataatccaaagcatcgacttatcaatgaacaaattattacacaactaaataacatca |
26365964 |
T |
|
| Q |
314 |
ttcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagcaagaaataaaccagata |
413 |
Q |
| |
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|||| |||| ||| ||||||||||||||||| |||||| ||||||| ||||| ||||||||||| ||| | ||||||||||||| | ||||||||||| |
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|
| T |
26365965 |
ttcaaatagataaaccagaaatggggtaaatgccagtaaagatcatattgtgccagcataaaaaatcagacacataaagcagcaaggactaaaccagata |
26366064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 78 - 410
Target Start/End: Original strand, 26363244 - 26363573
Alignment:
| Q |
78 |
gagcaacaccttctcaatgtagccggacatcaactttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaat |
177 |
Q |
| |
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|||||| |||||| ||||||||| |||||||||||||||| |||| |||| | ||| |||||||||||||||| ||||||||||| || |||||| | |
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| T |
26363244 |
gagcaaaaccttcacaatgtagctggacatcaactttttcaatattaaatcaaatttcctataagcatgccattctcaagttaaacacagacactc---t |
26363340 |
T |
|
| Q |
178 |
gctgcttgcag-taagtaaacttatccgcaactccaaaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgactt |
276 |
Q |
| |
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|| |||| | ||||||||||| || |||| ||| ||| |||| ||| |||||| |||| | | ||||||||||||||| ||||| | ||| |||| |
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| T |
26363341 |
gcagctttcccataagtaaacttgtcaacaac-ccacaaa-agagatatgcaatgcttcacactactgcattgttgtttcacaatccaaagaagttactt |
26363438 |
T |
|
| Q |
277 |
atcaaaaaacaaattatcacacaaccaaataatatcattcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcat-aaa |
375 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||| |||||| ||| |||||||| |||| ||| |
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| T |
26363439 |
atcaaagaacaaattattacacaaccaaataatatcattcaaatagataaaccagaaatggggtaaatgccagtaaagatcgcatagtgccagcataaaa |
26363538 |
T |
|
| Q |
376 |
aaattagatatataaagcagcaagaaataaaccag |
410 |
Q |
| |
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|||| ||| | ||||||||||| ||| |||||||| |
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|
| T |
26363539 |
aaatcagacacataaagcagcaggaactaaaccag |
26363573 |
T |
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