View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19163_high_1 (Length: 807)

Name: NF19163_high_1
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19163_high_1
NF19163_high_1
[»] chr2 (5 HSPs)
chr2 (45-558)||(40878533-40879046)
chr2 (659-708)||(13587407-13587456)
chr2 (659-708)||(13588099-13588148)
chr2 (659-696)||(32343005-32343042)
chr2 (669-706)||(35997684-35997721)
[»] chr6 (8 HSPs)
chr6 (659-731)||(173493-173565)
chr6 (659-721)||(15717444-15717506)
chr6 (659-721)||(17199391-17199453)
chr6 (660-721)||(17199287-17199348)
chr6 (659-721)||(17199600-17199662)
chr6 (669-719)||(30260259-30260309)
chr6 (670-708)||(31153933-31153971)
chr6 (210-248)||(16257382-16257420)
[»] chr3 (11 HSPs)
chr3 (659-731)||(31903345-31903417)
chr3 (659-721)||(36591110-36591172)
chr3 (659-731)||(33543338-33543410)
chr3 (663-707)||(11235498-11235542)
chr3 (659-721)||(33544262-33544324)
chr3 (663-721)||(36589998-36590056)
chr3 (659-721)||(35343363-35343425)
chr3 (669-708)||(21170744-21170783)
chr3 (674-721)||(30162292-30162339)
chr3 (669-706)||(47094708-47094745)
chr3 (669-706)||(53136492-53136529)
[»] chr7 (9 HSPs)
chr7 (659-731)||(25965535-25965607)
chr7 (659-721)||(25964493-25964555)
chr7 (659-721)||(33161765-33161827)
chr7 (659-731)||(34237819-34237885)
chr7 (659-721)||(34239255-34239317)
chr7 (659-708)||(26403782-26403831)
chr7 (670-708)||(43655455-43655493)
chr7 (669-708)||(28346593-28346632)
chr7 (669-708)||(40754837-40754876)
[»] chr8 (5 HSPs)
chr8 (659-721)||(13904207-13904269)
chr8 (659-721)||(13907242-13907304)
chr8 (659-721)||(11918694-11918756)
chr8 (669-708)||(7780202-7780241)
chr8 (669-708)||(7827168-7827207)
[»] chr5 (10 HSPs)
chr5 (677-731)||(7672328-7672382)
chr5 (659-721)||(11785495-11785557)
chr5 (669-708)||(41555192-41555231)
chr5 (187-235)||(9624689-9624737)
chr5 (659-721)||(1666070-1666135)
chr5 (669-708)||(5625456-5625495)
chr5 (45-92)||(9624586-9624633)
chr5 (669-708)||(20875076-20875115)
chr5 (669-708)||(25062297-25062336)
chr5 (669-708)||(27822780-27822819)
[»] chr4 (4 HSPs)
chr4 (659-721)||(35012006-35012068)
chr4 (663-720)||(13210593-13210650)
chr4 (669-707)||(45048747-45048785)
chr4 (669-706)||(43724449-43724486)
[»] chr1 (4 HSPs)
chr1 (659-721)||(34660652-34660714)
chr1 (659-721)||(34661731-34661793)
chr1 (669-706)||(48344318-48344355)
chr1 (669-706)||(48350690-48350727)
[»] scaffold0360 (2 HSPs)
scaffold0360 (669-708)||(7655-7694)
scaffold0360 (669-708)||(10681-10720)


Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 45 - 558
Target Start/End: Complemental strand, 40879046 - 40878533
Alignment:
Q  45 ataaatatggatataataaaatagagcatttaatgtaacactgttgaaattctcttgtaattctattttatcacgaaggtttctatcagattctttaggc 144  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40879046 ataaatatggatataataaaacagagcatttaatgtaacactgttgaaattctcttgtaattctattttatcacgaaggtttctatcagattctttaggc 40878947  T
Q  145 tttgttgttctttgaaactcatttgtaattccacttgctaattaaattacaactgttatctagttactctagacccttcagcatgagttgtccatttcct 244  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40878946 tttgttgttctttgaaactcttttgtaattccacttgctaattaaattacaactgttatctagttactctagacccttcagcatgagttgtccatttccc 40878847  T
Q  245 taataattaagctttgctaaaatagttccgataggtactgttttaatttgaaatctattgaactatttctgcaacttccttatcaaagttaaggcatagg 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878846 taataattaagctttgctaaaatagttccgataggtactgttttaatttgaaatctattgaactatttctgcaacttccttatcaaagttaaggcatagg 40878747  T
Q  345 atggatgtagaggaatatacaaagaggctattgaataactcattcttcctgttggtagtgtttgggaaagataattcaataactgtgaagcaccgacaca 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  40878746 atggatgtagaggaatatacaaagaggctattgaataactcattcttcctgtaggtagtgtttgggaaagataattcaataactgggaagcaccgacaca 40878647  T
Q  445 tacacaactataccgacaacaatttgagaaatgaagttattgaatgtcgcaatcatatgtgttggtgctgtggcgtcgtactctagacacatcttcatta 544  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  40878646 tacacaactataccgacaacaatttgagaaatgaagtaattgaatgtggcaatcacatgtgttggtgctgtggcgtcgtactctagacacagcttcatta 40878547  T
Q  545 taaagtgttagtgc 558  Q
    ||||||||||||||    
T  40878546 taaagtgttagtgc 40878533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 659 - 708
Target Start/End: Original strand, 13587407 - 13587456
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  13587407 gtcctttagcgcgttcccgccatctgaaacggcgggactggccgccggtc 13587456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 708
Target Start/End: Complemental strand, 13588148 - 13588099
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||| | ||||||||||||| |||||||| |||||||||||||||||    
T  13588148 gtcctttagcgcgttcccgccatctgaaacggtgggactggccgccggtc 13588099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 696
Target Start/End: Complemental strand, 32343042 - 32343005
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggac 696  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  32343042 gtcctttagcgcgttcccgccatttgaaacggcgggac 32343005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 706
Target Start/End: Original strand, 35997684 - 35997721
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccgg 706  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  35997684 gcgttcccgccatctgaaatggcgggactggccgccgg 35997721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 9e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 659 - 731
Target Start/End: Original strand, 173493 - 173565
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 731  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  173493 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtccgacacgtgtcacgatctgacag 173565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 659 - 721
Target Start/End: Complemental strand, 15717506 - 15717444
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  15717506 gtccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 15717444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 659 - 721
Target Start/End: Original strand, 17199391 - 17199453
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  17199391 gtccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 17199453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 660 - 721
Target Start/End: Original strand, 17199287 - 17199348
Alignment:
Q  660 tccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  17199287 tccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 17199348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 659 - 721
Target Start/End: Complemental strand, 17199662 - 17199600
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||  |||||||||||    
T  17199662 gtccttttgtgcgttcctgccatttgaaacggcgggactggccgctggtctgacacgtgtcac 17199600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 669 - 719
Target Start/End: Original strand, 30260259 - 30260309
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtc 719  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  30260259 gcgttcccgccatttgaaacggcgggattggccgccggtctaacacatgtc 30260309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 670 - 708
Target Start/End: Original strand, 31153933 - 31153971
Alignment:
Q  670 cgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  31153933 cgttcccgccatttgaaacggcggaactggccgccggtc 31153971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 16257420 - 16257382
Alignment:
Q  210 actctagacccttcagcatgagttgtccatttccttaat 248  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  16257420 actctggacccttcaacatgagttgtccatttccttaat 16257382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 9e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 659 - 731
Target Start/End: Complemental strand, 31903417 - 31903345
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 731  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  31903417 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtccgacacgtgtcacgatctgacag 31903345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 659 - 721
Target Start/End: Complemental strand, 36591172 - 36591110
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  36591172 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtctgacacgtgtcac 36591110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 659 - 731
Target Start/End: Original strand, 33543338 - 33543410
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 731  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  33543338 gtccttttgtgcgttcccgctgttttaaatggcgggactggccgccggtccgacacgtgtcacgatctgacag 33543410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 663 - 707
Target Start/End: Original strand, 11235498 - 11235542
Alignment:
Q  663 ttttgtgcgttcccgccatttgaaacggcgggactggccgccggt 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11235498 ttttgtgcgttcccgccatttgaaacggcgggactggccgccggt 11235542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 659 - 721
Target Start/End: Complemental strand, 33544324 - 33544262
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| ||||||  |||||||||||    
T  33544324 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccaccggtctgacacgtgtcac 33544262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 663 - 721
Target Start/End: Original strand, 36589998 - 36590056
Alignment:
Q  663 ttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||||||||    
T  36589998 ttttgtgcgttcccgccatttgaaacggcgggactagccgtcggtctgacacgtgtcac 36590056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 721
Target Start/End: Original strand, 35343363 - 35343425
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||| | ||||| ||||||||||||||| ||||||||||||||||||  |||| ||||||    
T  35343363 gtcctttagcgcgtttccgccatttgaaacgacgggactggccgccggtctgacacatgtcac 35343425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Original strand, 21170744 - 21170783
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  21170744 gcgttcccgccatctgaaatggcgggactggccgccggtc 21170783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 721
Target Start/End: Original strand, 30162292 - 30162339
Alignment:
Q  674 cccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    |||||||||||||||||||||||||||||||  ||  |||||||||||    
T  30162292 cccgccatttgaaacggcgggactggccgccaatctgacacgtgtcac 30162339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 706
Target Start/End: Original strand, 47094708 - 47094745
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccgg 706  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  47094708 gcgttcccgccatctgaaatggcgggactggccgccgg 47094745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 706
Target Start/End: Original strand, 53136492 - 53136529
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccgg 706  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  53136492 gcgttcccgccatctgaaatggcgggactggccgccgg 53136529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 659 - 731
Target Start/End: Complemental strand, 25965607 - 25965535
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 731  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||||| ||||||    
T  25965607 gtccttttgtgcgttcccgccatttgaaacggcgggactggtcgacggttcgacacgtgtcacgatgtgacag 25965535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 659 - 721
Target Start/End: Original strand, 25964493 - 25964555
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  25964493 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtctgacacgtgtcac 25964555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 659 - 721
Target Start/End: Complemental strand, 33161827 - 33161765
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  33161827 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtctgacacgtgtcac 33161765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 659 - 731
Target Start/End: Original strand, 34237819 - 34237885
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 731  Q
    |||||||||||||||||||||||||||||||||      |||||||||||| |||||||||||||||||||||    
T  34237819 gtccttttgtgcgttcccgccatttgaaacggc------ggccgccggtccgacacgtgtcacgatctgacag 34237885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 659 - 721
Target Start/End: Complemental strand, 34239317 - 34239255
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||   |||||||||||    
T  34239317 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtttgacacgtgtcac 34239255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 659 - 708
Target Start/End: Original strand, 26403782 - 26403831
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  26403782 gtccttttgtgcgttcccgccatctgaaacggcaggactggccgccggtc 26403831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 670 - 708
Target Start/End: Complemental strand, 43655493 - 43655455
Alignment:
Q  670 cgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  43655493 cgttcccgccatctgaaacggcgggactggccgccggtc 43655455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Original strand, 28346593 - 28346632
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  28346593 gcgttcccgccatctgaaatggcgggactggccgccggtc 28346632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Original strand, 40754837 - 40754876
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  40754837 gcgttcccgccatctgaaatggcgggactggccgccggtc 40754876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 659 - 721
Target Start/End: Original strand, 13904207 - 13904269
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  13904207 gtccttttgtgcgttcccgccatttgaaacggcggaactggccgccggtctgacacgtgtcac 13904269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 659 - 721
Target Start/End: Complemental strand, 13907304 - 13907242
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  13907304 gtccttttgtgcgttcccgccctttgaaagggcgggactggccgccggtctgacacgtgtcac 13907242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 659 - 721
Target Start/End: Original strand, 11918694 - 11918756
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||||  |||| ||||||    
T  11918694 gtcctttagcgcgttcccgccatttgaaacggcgggactgaccgccggtctgacacatgtcac 11918756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Original strand, 7780202 - 7780241
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7780202 gcgttcccgccatctgaaatggcgggactggccgccggtc 7780241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Original strand, 7827168 - 7827207
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7827168 gcgttcccgccatctgaaatggcgggactggccgccggtc 7827207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 677 - 731
Target Start/End: Complemental strand, 7672382 - 7672328
Alignment:
Q  677 gccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 731  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  7672382 gccatttgaaacggcaggactggccgccggtccgacacgtgtcacgatctgacag 7672328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 659 - 721
Target Start/End: Complemental strand, 11785557 - 11785495
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    |||||||| |||||||||||| ||||||| ||||||| ||||||||||||  |||||||||||    
T  11785557 gtccttttctgcgttcccgccgtttgaaatggcgggattggccgccggtctgacacgtgtcac 11785495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 669 - 708
Target Start/End: Original strand, 41555192 - 41555231
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  41555192 gcgttcccgccatctgaaacggcgggactggccgccggtc 41555231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 9624689 - 9624737
Alignment:
Q  187 taaattacaactgttatctagttactctagacccttcagcatgagttgt 235  Q
    |||||||| | ||||||||| ||||||||||||||||| ||||||||||    
T  9624689 taaattaccattgttatctaattactctagacccttcaacatgagttgt 9624737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 721
Target Start/End: Original strand, 1666070 - 1666135
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggac---tggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||| ||| |||| | |||||   ||||||||||||| |||||||||||    
T  1666070 gtccttttgtgcgttcccgccgtttcaaactgagggactggtggccgccggtccgacacgtgtcac 1666135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Original strand, 5625456 - 5625495
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  5625456 gcgttcccgccatctgaaatggcgggactggccgccggtc 5625495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 9624586 - 9624633
Alignment:
Q  45 ataaatatggatataataaaatagagcatttaatgtaacactgttgaa 92  Q
    |||||||||||||||||||||| ||||  ||||||||||| |||||||    
T  9624586 ataaatatggatataataaaattgagctgttaatgtaacattgttgaa 9624633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Original strand, 20875076 - 20875115
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  20875076 gcgttcccgccatctgaaatggcgggactggccgccggtc 20875115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Complemental strand, 25062336 - 25062297
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  25062336 gcgttcccgccatctgaaatggcgggactggccgccggtc 25062297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Complemental strand, 27822819 - 27822780
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  27822819 gcgttcccgccatctgaaatggcgggactggccgccggtc 27822780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 659 - 721
Target Start/End: Original strand, 35012006 - 35012068
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  35012006 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtcggacacgtgtcac 35012068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 663 - 720
Target Start/End: Complemental strand, 13210650 - 13210593
Alignment:
Q  663 ttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtca 720  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  13210650 ttttgtgcgttcccgccatttgaaacggcgggactgaccgccggtctgacacgtgtca 13210593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 669 - 707
Target Start/End: Complemental strand, 45048785 - 45048747
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggt 707  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  45048785 gcgttcccgccatctgaaatggcgggactggccgccggt 45048747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 706
Target Start/End: Original strand, 43724449 - 43724486
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccgg 706  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  43724449 gcgttcccgccatctgaaatggcgggactggccgccgg 43724486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 659 - 721
Target Start/End: Original strand, 34660652 - 34660714
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  34660652 gtcctttagcgcgttcccgccatttgaaacggcgggactggccgccggtctgacacatgtcac 34660714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 659 - 721
Target Start/End: Complemental strand, 34661793 - 34661731
Alignment:
Q  659 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 721  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  34661793 gtcctttagcgcgttcccgccatttgaaacggcgggactggccgccggtctgacacatgtcac 34661731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 706
Target Start/End: Original strand, 48344318 - 48344355
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccgg 706  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  48344318 gcgttcccgccacctgaaacggcgggactggccgccgg 48344355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 706
Target Start/End: Complemental strand, 48350727 - 48350690
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccgg 706  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  48350727 gcgttcccgccacctgaaacggcgggactggccgccgg 48350690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Original strand, 7655 - 7694
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7655 gcgttcccgccatctgaaatggcgggactggccgccggtc 7694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 708
Target Start/End: Complemental strand, 10720 - 10681
Alignment:
Q  669 gcgttcccgccatttgaaacggcgggactggccgccggtc 708  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  10720 gcgttcccgccatctgaaatggcgggactggccgccggtc 10681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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