View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_high_12 (Length: 461)
Name: NF19163_high_12
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 4244230 - 4244650
Alignment:
| Q |
14 |
agattaacttgaatttaaactagatatcacctggtaaattagaagtgacatgaagtactatctcatttgattgcttttgtctaagatacgcattaaatgc |
113 |
Q |
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| T |
4244230 |
agattaacttgaatttaaactagatatcacatggtaaattagaagtgacatgaagtactatctcatttgattgcttttgtctaagatacgcattaaatgc |
4244329 |
T |
|
| Q |
114 |
tatcaagatagtgaagcaaacaaaaatcttaaacatacatagaccaaagaacattgtgattgtgctatgttatttgctatcaagannnnnnnnn-aggga |
212 |
Q |
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| T |
4244330 |
tatcaagatagtgaagcaaacaaaaatcttaaacatacatagaccaaagaacattgtg------ctatgttatttgctatcaagattttttttttaggga |
4244423 |
T |
|
| Q |
213 |
ttgctatcaagatttaannnnnnncacttaaaatagtactatatatataagtcagaatgttgactttcatttcggttgtaggacaaatttctcgaatacc |
312 |
Q |
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||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244424 |
ttgctatcaagatttaatttttttcacttaaaatacta-----tatataagtcagaatgttgactttcatttcggttgtaggacaaatttctcgaatacc |
4244518 |
T |
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| Q |
313 |
caactcacatgagcaaacaatgattacaaattccctgttatatcagattgaaaacgatatctcgatatcaaattgctcctcctctcccgatacaatcttc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244519 |
caactcacatgagcaaacaatgattacaaattccctgttatatcagattgaaaacgatatctcgatatcaaattgctcctcctctcccgatacaatctta |
4244618 |
T |
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| Q |
413 |
tttaaagtatttatatataatataagaaatat |
444 |
Q |
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| T |
4244619 |
tttaaagtatttatatataatataagaaatat |
4244650 |
T |
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