View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_high_14 (Length: 409)
Name: NF19163_high_14
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 10204463 - 10204262
Alignment:
| Q |
13 |
agaaatcgtacatcttaaggtgctcgtatccttaaaattttattattaattaaagccaagcataatctcaaagatgggttctcttaacgtgttggctcta |
112 |
Q |
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| T |
10204463 |
agaaatcgtacatcttaaggtgcttgtatccttaaaattttattattaattaaagctaagaataatttcaaagatgggttctcttaacgtgttggctcta |
10204364 |
T |
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| Q |
113 |
gtgattcattttttctagtatacccattggacctccattgacccttttgtggacattaatgacatggctctcaaaataaatgaagtatgtacctgtatca |
212 |
Q |
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| T |
10204363 |
gtgattcattttttctagtatacccattggacttccattgaccctttcgtggacattaatgacatggctctcaaaataaatgaagtatgtacctgtatca |
10204264 |
T |
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| Q |
213 |
tc |
214 |
Q |
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|| |
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| T |
10204263 |
tc |
10204262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 238 - 394
Target Start/End: Complemental strand, 10204270 - 10204114
Alignment:
| Q |
238 |
tgtatcacacatttgtacaagagtgtgaagaacttgatgatctttcaatttagcctgaattatcaatcagttgtagaaatcttgaaccgtggtttgtaat |
337 |
Q |
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| T |
10204270 |
tgtatcatccatttgtacaagagtgtgaagaacttgatgatctttcaatttagcctgaattatcaatcagttgtagaaatcttgaaccttggtttgtaat |
10204171 |
T |
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| Q |
338 |
atcaatacttggattctaagccaagtgcttatgatacaattaattcaatgaagtatt |
394 |
Q |
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| T |
10204170 |
atcaatacttggattctaagccaagtgcttatgatacaattaattcaatgaagtatt |
10204114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 1194306 - 1194266
Alignment:
| Q |
349 |
gattctaagccaagtgcttatgatacaattaattcaatgaa |
389 |
Q |
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| T |
1194306 |
gattctaagccaactgctcatgatacaattaattcaatgaa |
1194266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 1188888 - 1188856
Alignment:
| Q |
311 |
tagaaatcttgaaccgtggtttgtaatatcaat |
343 |
Q |
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| T |
1188888 |
tagaaatcttgaaccttggtttgtaatatcaat |
1188856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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